def convert(source_inv_fp, output_path):
""" Converter for ISA-Tab to MAGE-TAB.
:param source_inv_fp: File descriptor of input investigation file
:param output_dir: Path to directory to write output MAGE-TAB files to
"""
ISA = isatab.load(source_inv_fp)
magetab.dump(ISA, output_path)
def convert(source_json_fp, out_path):
""" Converter for ISA-JSON to MAGE-Tab.
:param source_json_fp: File descriptor of input ISA JSON file
:param out_path: Output path to write output MAGE-Tab to
"""
ISA = isajson.load(source_json_fp)
magetab.dump(ISA, out_path)
def convert(source_json_fp, out_path):
""" Converter for ISA-JSON to MAGE-Tab.
:param source_json_fp: File descriptor of input ISA JSON file
:param out_path: Output path to write output MAGE-Tab to
"""
log.info("loading isajson %s", source_json_fp.name)
ISA = isajson.load(source_json_fp)
log.info("dumping magetab %s", out_path)
magetab.dump(ISA, out_path)