def main():
load('bookshelf.conf')
if config('LOCALE') is not None and config('LOCALE') != '':
Locale.setDefault(Locale(config('LOCALE')))
from window import BookshelfView
from logic import Bookshelf
UIManager.setLookAndFeel(UIManager.getSystemLookAndFeelClassName())
view = BookshelfView(Bookshelf())
screenSize = Toolkit.getDefaultToolkit().getScreenSize();
view.setLocation(screenSize.width/5, screenSize.height/5)
view.setVisible(1)
def get_pdbredo_data(pdbids=[]):
global CACHE_EXPIRED
alldatapath = os.path.join(PDBfiles.CACHEDIR, os.path.basename(ALLDATA_URL))
# if not os.path.isfile(alldatapath): #Download
tries = 3
dateformat = " on %a, %d %b %Y %H:%M:%S "
while tries > 0:
tries -= 1
if sys.platform.startswith("java"):
oldlocale = Locale.getDefault()
Locale.setDefault(Locale.ENGLISH)
try:
download = False
olddate = datetime.datetime(1, 1, 1)
if os.path.isfile(alldatapath):
alldata = open(alldatapath, "r")
for line in alldata:
if "Created on" in line:
olddate = datetime.datetime.strptime(line.split("+")[0].split("Created")[1], dateformat)
break
alldata.close()
rfh = urllib2.urlopen(ALLDATA_URL)
firstlines = ""
for line in rfh:
if download:
alldata.write(line)
continue
firstlines += line
if not download and "Created on" in line:
newdate = datetime.datetime.strptime(line.split("+")[0].split("Created")[1], dateformat)
if newdate <= olddate:
print "%s is up to date (%s)" % (alldatapath, olddate.__str__())
CACHE_EXPIRED = False
break
else:
CACHE_EXPIRED = True
download = True
alldata = open(alldatapath, "w")
alldata.write(firstlines)
print "Downloading %s" % ALLDATA_URL
# alldata.write(rfh.read())
alldata.close()
rfh.close()
break
except Exception, e:
print "Could not download", ALLDATA_URL
print e
print "Retrying...", tries
time.sleep(1)
if sys.platform.startswith("java"):
Locale.setDefault(oldlocale)
isTemporal = True
else:
isDominant = True
isTemporal = False
else:
isDominant = False
isTemporal = False
lpath = None
if isTemporal:
myPath = ".lositemp"
elif isDominant:
myPath = ".mcheza"
else:
myPath = ".lositan"
for path in sys.path:
if path.find(myPath) > -1 and path.find("jar") == -1 and \
path.find("libs") == -1:
lpath = path
if not lpath: #local mode
for path in sys.path:
if path.find('scratch') > -1 and path.find("jar") == -1 and \
path.find("libs") == -1:
lpath = path
Locale.setDefault(Locale.US)
openDir()
prepareFDist()
styleApp()
frame = createFrame()
dataPath = None
disablePanel(empiricalPanel, ["theta", "beta1", "beta2", "crit"])
def aozan_main():
"""Aozan main method.
"""
# Define command line parser
parser = OptionParser(usage='usage: ' + Globals.APP_NAME_LOWER_CASE + '.sh [options] conf_file')
parser.add_option('-q', '--quiet', action='store_true', dest='quiet',
default=False, help='quiet')
parser.add_option('-v', '--version', action='store_true', dest='version', help='Aozan version')
parser.add_option('-e', '--exit-code', action='store_true', dest='exit_code',
help='Returns non zero exit code if a step fails')
parser.add_option('-c', '--conf', action='store_true', dest='conf',
help='Default Aozan configuration, loads before configuration file.')
# Parse command line arguments
(options, args) = parser.parse_args()
# Print Aozan current version
if options.version:
print Globals.WELCOME_MSG
sys.exit(0)
# Print default configuration option
if options.conf:
print common.print_default_configuration()
sys.exit(0)
# If no argument print usage
if len(args) < 1:
parser.print_help()
sys.exit(1)
# Create configuration object
conf = LinkedHashMap()
# Set the default value in the configuration object
common.set_default_conf(conf)
# Use default (US) locale
Locale.setDefault(Globals.DEFAULT_LOCALE)
# Check if OS is Linux
if not SystemUtils.isLinux():
sys.stderr.write('ERROR: Aozan can not be executed. Operating system is not Linux\n')
sys.exit(1)
# Check if configuration file exists
conf_file = args[0]
if not os.path.isfile(conf_file):
sys.stderr.write('ERROR: Aozan can not be executed. Configuration file is missing: ' + \
conf_file + '\n')
sys.exit(1)
# Load Aozan conf file
common.load_conf(conf, conf_file)
# End of Aozan if aozan is not enable
if common.is_conf_value_defined(AOZAN_ENABLE_KEY, 'false', conf):
sys.exit(0)
# Init logger
try:
Common.initLogger(conf[AOZAN_LOG_PATH_KEY], conf[AOZAN_LOG_LEVEL_KEY])
except AozanException, exp:
common.exception_msg(exp, conf)
