def make_range(clusters, extend=0):
"""
Convert to interval ends from a list of anchors
extend modifies the xmax, ymax boundary of the box,
which can be positive or negative
very useful when we want to make the range as fuzzy as we specify
"""
eclusters = []
for cluster in clusters:
xlist, ylist, scores = zip(*cluster)
score = _score(cluster)
xchr, xmin = min(xlist)
xchr, xmax = max(xlist)
ychr, ymin = min(ylist)
ychr, ymax = max(ylist)
# allow fuzziness to the boundary
xmax += extend
ymax += extend
# because extend can be negative values, we don't want it to be less than min
if xmax < xmin:
xmin, xmax = xmax, xmin
if ymax < ymin:
ymin, ymax = ymax, ymin
eclusters.append(((xchr, xmin, xmax), \
(ychr, ymin, ymax), score))
return eclusters
def make_range(clusters, extend=0):
"""
Convert to interval ends from a list of anchors
extend modifies the xmax, ymax boundary of the box,
which can be positive or negative
very useful when we want to make the range as fuzzy as we specify
"""
eclusters = []
for cluster in clusters:
xlist, ylist, scores = zip(*cluster)
score = _score(cluster)
xchr, xmin = min(xlist)
xchr, xmax = max(xlist)
ychr, ymin = min(ylist)
ychr, ymax = max(ylist)
# allow fuzziness to the boundary
xmax += extend
ymax += extend
# because extend can be negative values, we don't want it to be less than min
if xmax < xmin:
xmin, xmax = xmax, xmin
if ymax < ymin:
ymin, ymax = ymax, ymin
eclusters.append(((xchr, xmin, xmax), (ychr, ymin, ymax), score))
return eclusters