def get_train_dataloader_from_cache(
train_cache: caching.ChunkedFilesDataCache,
task,
train_batch_size: int,
sample_weights_path=None,
fix_seed_for_weighted_sampler=False,
):
# TODO: Expose buffer_size parameter (issue #1183)
if sample_weights_path is not None:
dataset = train_cache.get_iterable_dataset(buffer_size=10000,
shuffle=False)
dataset = _ListDataset([elem for elem in dataset])
_sample_weights = pd.read_csv(sample_weights_path,
sep='\t',
header=None)[0]
sampler = WeightedDatasetSampler(
dataset, _sample_weights, fix_seed=fix_seed_for_weighted_sampler)
else:
dataset = train_cache.get_iterable_dataset(buffer_size=10000,
shuffle=True)
sampler = None
train_dataloader = torch_utils.DataLoaderWithLength(
dataset=dataset,
batch_size=train_batch_size,
collate_fn=task.collate_fn,
sampler=sampler)
return train_dataloader
def get_train_dataloader_from_cache(
train_cache: caching.ChunkedFilesDataCache, task, train_batch_size: int
):
# TODO: Expose buffer_size parameter (issue #1183)
dataset = train_cache.get_iterable_dataset(buffer_size=10000, shuffle=True)
train_dataloader = torch_utils.DataLoaderWithLength(
dataset=dataset, batch_size=train_batch_size, collate_fn=task.collate_fn,
)
return train_dataloader
def get_train_dataloader_from_cache(
train_cache: caching.ChunkedFilesDataCache,
task,
train_batch_size: int,
batch_method: str,
min_batch_size: int,
total_batches: int,
matchlist_pickle_path: int,
):
# TODO: Expose buffer_size parameter (Issue #50)
if batch_method == 'default':
dataset = train_cache.get_iterable_dataset(buffer_size=10000,
shuffle=True)
train_dataloader = torch_utils.DataLoaderWithLength(
dataset=dataset,
batch_size=train_batch_size,
collate_fn=task.collate_fn,
)
elif batch_method == 'clustered':
dataset = train_cache.get_uniterable_dataset(buffer_size=10000)
assert (
total_batches > 0
), f"Must define total number of batches to generate. Given: {total_batches}."
assert (
train_batch_size > 0
), f"Max batch size must be greater than zero. Given: {train_batch_size}."
# Currently only supports pickled matchlist. Could potentially incorporate matching, but may take long
# depending on size of data.
assert os.path.exists(
matchlist_pickle_path
), f"Must first create pickled match list or path given does not exist. Given: {matchlist_pickle_path}"
match_list = pickle.load(open(matchlist_pickle_path, 'rb'))
matched_random_batch_sampler = torch_utils.MatchedRandomBatchSampler(
min_batch_size=min_batch_size,
max_batch_size=train_batch_size,
drop_last=True,
match_list=match_list,
total_batches=total_batches,
)
train_dataloader = torch_utils.DataLoader(
dataset=dataset,
collate_fn=task.collate_fn,
batch_sampler=matched_random_batch_sampler,
)
else:
raise KeyError(f"Batching method not supported: {batch_method}")
return train_dataloader
def get_eval_dataloader_from_cache(
eval_cache: caching.ChunkedFilesDataCache,
task,
eval_batch_size: int,
subset_num=None,
explicit_subset=None,
):
dataset = eval_cache.get_iterable_dataset(
buffer_size=10000, shuffle=False, subset_num=subset_num, explicit_subset=explicit_subset,
)
eval_dataloader = torch_utils.DataLoaderWithLength(
dataset=dataset, batch_size=eval_batch_size, collate_fn=task.collate_fn,
)
return eval_dataloader