def test_info_html_table(self):
from jicbioimage.core.image import MicroscopyImage
microscopy_image = MicroscopyImage('dummy.tif',
dict(series=0, channel=1, zslice=2, timepoint=3))
self.assertEqual(
microscopy_image.__info_html_table__(30).strip().replace(' ', ''),
'''
<table>
<tr>
<th>Index</th>
<th>Series</th>
<th>Channel</th>
<th>Z-slice</th>
<th>Time point</th>
</tr>
<tr>
<td>30</td>
<td>0</td>
<td>1</td>
<td>2</td>
<td>3</td>
</tr>
</table>
'''.strip().replace(' ', '')
)
def test_in_zstack(self):
from jicbioimage.core.image import MicroscopyImage
microscopy_image = MicroscopyImage('dummy.tif',
dict(series=0, channel=1, zslice=2, timepoint=3))
self.assertTrue(microscopy_image.in_zstack(s=0, c=1, t=3))
self.assertFalse(microscopy_image.in_zstack(s=5, c=1, t=3))
def test_repr_png_return_type(self):
from jicbioimage.core.image import MicroscopyImage
fpath = os.path.join(DATA_DIR, 'tjelvar.png')
microscopy_image = MicroscopyImage(fpath,
dict(series=0, channel=0, zslice=0, timepoint=0))
self.assertEqual(type(microscopy_image._repr_png_()), bytes)
