def test_non_empty_hierarchy(self):
"""."""
model = KamiCorpus("test")
plcg1_pY1253 = Protoform("P19174",
synonyms=["PLCG1"],
residues=[
Residue("Y",
1253,
state=State(
"phosphorylation", True))
])
sh2 = Region(name="SH2")
abl1 = Protoform("P00519", synonyms=["ABL1"])
abl1_sh2 = RegionActor(abl1, sh2)
bnd = Binding(plcg1_pY1253, abl1_sh2)
model.add_interactions([bnd], model)
assert (model.empty() is False)
model.export_json("test_non_empty_hierarchy.json")
new_model = KamiCorpus.load_json("test",
"test_non_empty_hierarchy.json")
assert (isinstance(new_model, KamiCorpus))
assert (("test_action_graph", "meta_model")
in new_model._hierarchy.edges())
def test_empty_hierarchy(self):
"""Test getters for various model components."""
model = KamiCorpus("test")
assert (model.action_graph is not None)
assert (len(model.nuggets()) == 0)
assert (model.empty())
model.export_json("test_empty_hierarchy.json")
new_model = KamiCorpus.load_json("test", "test_empty_hierarchy.json")
assert (isinstance(new_model, KamiCorpus))
# assert(new_model._hierarchy == model._hierarchy)
assert (model.mod_template is
model._hierarchy.get_graph("mod_template"))
assert (model.bnd_template is
model._hierarchy.get_graph("bnd_template"))
assert (model.semantic_action_graph is
model._hierarchy.get_graph("semantic_action_graph"))