Exemplos de kb_blast em Python

Exemplo n.º 1

 def setUpClass(cls):
     token = environ.get('KB_AUTH_TOKEN', None)
     config_file = environ.get('KB_DEPLOYMENT_CONFIG', None)
     cls.cfg = {}
     config = ConfigParser()
     config.read(config_file)
     for nameval in config.items('kb_blast'):
         cls.cfg[nameval[0]] = nameval[1]
     # Getting username from Auth profile for token
     authServiceUrl = cls.cfg['auth-service-url']
     auth_client = _KBaseAuth(authServiceUrl)
     user_id = auth_client.get_user(token)
     # WARNING: don't call any logging methods on the context object,
     # it'll result in a NoneType error
     cls.ctx = MethodContext(None)
     cls.ctx.update({
         'token':
         token,
         'user_id':
         user_id,
         'provenance': [{
             'service': 'kb_blast',
             'method': 'please_never_use_it_in_production',
             'method_params': []
         }],
         'authenticated':
         1
     })
     cls.wsURL = cls.cfg['workspace-url']
     cls.wsClient = workspaceService(cls.wsURL)
     cls.serviceImpl = kb_blast(cls.cfg)
     cls.scratch = cls.cfg['scratch']
     cls.callback_url = os.environ['SDK_CALLBACK_URL']

Exemplo n.º 2

Arquivo: kb_blast_server_test.py Projeto: monicaaj/kb_blast

 def setUpClass(cls):
     token = environ.get('KB_AUTH_TOKEN', None)
     cls.ctx = {
         'token':
         token,
         'provenance': [{
             'service': 'kb_blast',
             'method': 'please_never_use_it_in_production',
             'method_params': []
         }],
         'authenticated':
         1
     }
     config_file = environ.get('KB_DEPLOYMENT_CONFIG', None)
     cls.cfg = {}
     config = ConfigParser()
     config.read(config_file)
     for nameval in config.items('kb_blast'):
         cls.cfg[nameval[0]] = nameval[1]
     cls.wsURL = cls.cfg['workspace-url']
     cls.wsClient = workspaceService(cls.wsURL, token=token)
     cls.serviceImpl = kb_blast(cls.cfg)

Exemplo n.º 3

Arquivo: kb_blastServer.py Projeto: mclark58/kb_blast

def get_config():
    if not get_config_file():
        return None
    retconfig = {}
    config = ConfigParser()
    config.read(get_config_file())
    for nameval in config.items(get_service_name() or 'kb_blast'):
        retconfig[nameval[0]] = nameval[1]
    return retconfig


config = get_config()

from kb_blast.kb_blastImpl import kb_blast  # noqa @IgnorePep8

impl_kb_blast = kb_blast(config)


class JSONObjectEncoder(json.JSONEncoder):
    def default(self, obj):
        if isinstance(obj, set):
            return list(obj)
        if isinstance(obj, frozenset):
            return list(obj)
        if hasattr(obj, 'toJSONable'):
            return obj.toJSONable()
        return json.JSONEncoder.default(self, obj)


class JSONRPCServiceCustom(JSONRPCService):
    def call(self, ctx, jsondata):

Exemplo n.º 4

Arquivo: kb_blastServer.py Projeto: dcchivian/kb_blast

def get_config():
    if not get_config_file():
        return None
    retconfig = {}
    config = ConfigParser()
    config.read(get_config_file())
    for nameval in config.items(get_service_name() or 'kb_blast'):
        retconfig[nameval[0]] = nameval[1]
    return retconfig

config = get_config()

from kb_blast.kb_blastImpl import kb_blast  # noqa @IgnorePep8
impl_kb_blast = kb_blast(config)


class JSONObjectEncoder(json.JSONEncoder):

    def default(self, obj):
        if isinstance(obj, set):
            return list(obj)
        if isinstance(obj, frozenset):
            return list(obj)
        if hasattr(obj, 'toJSONable'):
            return obj.toJSONable()
        return json.JSONEncoder.default(self, obj)


class JSONRPCServiceCustom(JSONRPCService):