def __init__(self, part):
"""
Constructs a Parser object for a specific read type in an infinite result .xml
"""
self.xml = objectify.fromstring(etree.tostring(part))
self.wc = XMLWalker(self.xml)
self._wells = {}
def __init__(self, xml):
"""
Constructs a Parser object for Infinite Result .xml
"""
self.xml = objectify.fromstring(etree.tostring(xml))
self.barcode = self.xml.xpath('/MeasurementResultData/Plate/BC/text()')
self.sections = self.xml.xpath('/MeasurementResultData/Section')
self.wc = XMLWalker(self.xml)
xp = "//Section/Data?run:int=@Cycle" + "/Well?well=@Pos/Single?value:int=text()"
xp = "//Section/Data?run:int=@Cycle/Well?well=@Pos/Multiple?location:well1=@MRW_Position&value=text()"
pr = AbsorbanceMultiRead(self.sections[0])
print pr.result
# This actually calls the update
o.id = 1
# And show all ids
print o.id
# print etree.tostring(o.xobj , pretty_print = True)
o2 = XMLBind(objectify.fromstring(template), namespaces={"ns": "tecan.at.schema.documents"})
for key, value in o2.inspect(unique=True).iteritems():
print key, ":", value
# Walker Test with namespace
wc = XMLWalker(root)
xp = "//ReadingFilter?type=@type"
result = wc.walk(XPathAnalyzer(xp, namespaces={"ns": "tecan.at.schema.documents"}))
print len(result)
print result
# Walker Test without namespace
root = objectify.fromstring(etree.tostring(objectify.parse("gen.xml")))
wc = XMLWalker(root)
xp = "//Well?pos=@Pos/Scan?wave=@WL&val=text()"
result = wc.walk(XPathAnalyzer(xp))
# This actually calls the update
o.id = 1
# And show all ids
print o.id
# print etree.tostring(o.xobj , pretty_print = True)
o2 = XMLBind(objectify.fromstring(template),
namespaces={'ns': 'tecan.at.schema.documents'})
for key, value in o2.inspect(unique=True).iteritems():
print key, ":", value
# Walker Test with namespace
wc = XMLWalker(root)
xp = "//ReadingFilter?type=@type"
result = wc.walk(
XPathAnalyzer(xp, namespaces={'ns': 'tecan.at.schema.documents'}))
print len(result)
print result
# Walker Test without namespace
root = objectify.fromstring(etree.tostring(objectify.parse('gen.xml')))
wc = XMLWalker(root)
xp = "//Well?pos=@Pos/Scan?wave=@WL&val=text()"
else:
d['plate_rows'] = 0
d['plate_columns'] = 0
del d['plate_wells']
c = Container(d)
c.store(d.keys())
filename = 'imports/containerTypes.cfg.txt'
s = etree.tostring(objectify.parse(filename), pretty_print=True)
s = string.replace(s, '\\', '/')
s = s.decode('unicode_escape').encode('ascii', 'ignore')
root = objectify.fromstring(s)
wk = XMLWalker(root)
definition = {
'general_id': '/Name',
'general_name_short': '/Name',
'general_name': '/Name',
'general_description': '/Description',
'general_image': '/ImagePath',
'manufacturer_name': '/Manufacturer',
'manufacturer_url': '/ManufacturerUrl',
'manufacturer_number': '/PartNumber',
'manufacturer_product_url': '/ProductInformationUrl',
'id_momentum': '/Id',
'plate_height': '/Height',
'plate_length': '/Length',
'plate_width': '/Width',
else:
d['plate_rows'] = 0
d['plate_columns'] = 0
del d['plate_wells']
c = Container(d)
c.store(d.keys())
filename = 'imports/containerTypes.cfg.txt'
s = etree.tostring(objectify.parse(filename), pretty_print=True)
s = string.replace(s, '\\', '/')
s = s.decode('unicode_escape').encode('ascii', 'ignore')
root = objectify.fromstring(s)
wk = XMLWalker(root)
definition = {
'general_id': '/Name',
'general_name_short': '/Name',
'general_name': '/Name',
'general_description': '/Description',
'general_image': '/ImagePath',
'manufacturer_name': '/Manufacturer',
'manufacturer_url': '/ManufacturerUrl',
'manufacturer_number': '/PartNumber',
'manufacturer_product_url': '/ProductInformationUrl',
'id_momentum': '/Id',
'plate_height': '/Height',
'plate_length': '/Length',
'plate_width': '/Width',
#s = db.get(files[2]['id'])
#root = objectify.fromstring(s, parser=None)
#root = objectify.parse('filename.xml')
root = objectify.fromstring(etree.tostring(objectify.parse('E_PTT_BeamLocation_A12345678W_20140729_225738.xml')))
print etree.tostring(root, pretty_print=True)
# root.xpath('//Section/Data/Well/Multiple')
# root.xpath('//Section[@Name='Label1']/Data/Well/Multiple')
# root.xpath('//Section[@Name='Label1']/Data/Well/Multiple?pos=@MRW_Position')
# root.xpath('//Section[@Name='Label1']/Data/Well/Multiple/@MRW_Position')
wk = XMLWalker(root)
data = wk.walk(XPathAnalyzer("//Section[@Name='Label1']/Data/Well?well=@Pos/Multiple?pos=@MRW_Position&value='/text()'"))
print data
beams = {}
for d in data:
p = d['pos'].split(';')
if len(p) > 1:
if d['well'] not in beams:
beams[d['well']] = np.ones([15, 15]) * (-0.1)
beams[d['well']][int(p[0]), int(p[1])] = float(d['value'])
grayscale = " .:-=+*#%@"
#root = objectify.fromstring(s, parser=None)
#root = objectify.parse('filename.xml')
root = objectify.fromstring(
etree.tostring(
objectify.parse('E_PTT_BeamLocation_A12345678W_20140729_225738.xml')))
print etree.tostring(root, pretty_print=True)
# root.xpath('//Section/Data/Well/Multiple')
# root.xpath('//Section[@Name='Label1']/Data/Well/Multiple')
# root.xpath('//Section[@Name='Label1']/Data/Well/Multiple?pos=@MRW_Position')
# root.xpath('//Section[@Name='Label1']/Data/Well/Multiple/@MRW_Position')
wk = XMLWalker(root)
data = wk.walk(
XPathAnalyzer(
"//Section[@Name='Label1']/Data/Well?well=@Pos/Multiple?pos=@MRW_Position&value='/text()'"
))
print data
beams = {}
for d in data:
p = d['pos'].split(';')
if len(p) > 1:
if d['well'] not in beams:
beams[d['well']] = np.ones([15, 15]) * (-0.1)
