def test_library_prep_16S_composition_attributes(self):
obs = LibraryPrep16SComposition(1)
self.assertEqual(obs.container, Well(3075))
self.assertEqual(obs.total_volume, 10)
self.assertIsNone(obs.notes)
self.assertEqual(obs.gdna_composition, GDNAComposition(1))
self.assertEqual(obs.primer_composition, PrimerComposition(1))
self.assertEqual(obs.composition_id, 3083)
def test_gDNA_composition_attributes(self):
obs = GDNAComposition(1)
self.assertEqual(obs.sample_composition, SampleComposition(1))
self.assertEqual(obs.upstream_process, GDNAExtractionProcess(1))
self.assertEqual(obs.container, Well(3074))
self.assertEqual(obs.total_volume, 10)
self.assertIsNone(obs.notes)
self.assertEqual(obs.composition_id, 3082)
def test_normalized_gDNA_composition_attributes(self):
obs = NormalizedGDNAComposition(1)
self.assertEqual(obs.container, Well(3077))
self.assertEqual(obs.total_volume, 3500)
self.assertIsNone(obs.notes)
self.assertEqual(obs.gdna_composition, GDNAComposition(2))
self.assertEqual(obs.dna_volume, 415)
self.assertEqual(obs.water_volume, 3085)
self.assertEqual(obs.composition_id, 3085)
def test_composition_factory(self):
self.assertEqual(Composition.factory(3073), ReagentComposition(1))
self.assertEqual(Composition.factory(1537), PrimerComposition(1))
self.assertEqual(Composition.factory(1), PrimerSetComposition(1))
self.assertEqual(Composition.factory(3081), SampleComposition(1))
self.assertEqual(Composition.factory(3082), GDNAComposition(1))
self.assertEqual(Composition.factory(3083),
LibraryPrep16SComposition(1))
self.assertEqual(Composition.factory(3085),
NormalizedGDNAComposition(1))
self.assertEqual(Composition.factory(3086),
LibraryPrepShotgunComposition(1))
self.assertEqual(Composition.factory(3078), PoolComposition(1))
def test_compressed_gDNA_composition_attributes(self):
obs = CompressedGDNAComposition(1)
self.assertEqual(obs.container, Well(3076))
self.assertEqual(obs.total_volume, 10)
self.assertIsNone(obs.notes)
self.assertEqual(obs.gdna_composition, GDNAComposition(1))