def build(self,
afm: AuxiliaryFileManager,
*inputs: AuxiliaryFile
) -> Union[None, AuxiliaryFile, Tuple[AuxiliaryFile, ...]]:
with afm.auxiliary_scope():
outputs = inputs
for builder in self.builders:
outputs = builder.build(afm, *outputs)
# Lock output auxiliary files to protect from deleting for
# passing to next builder.
if isinstance(outputs, AuxiliaryFile):
outputs.lock()
outputs = (outputs,)
elif isinstance(outputs, tuple):
for af in outputs:
if not isinstance(af, AuxiliaryFile):
raise TypeError(f'element {type(af)} is not an '
f'auxiliary file.')
af.lock()
elif outputs is None:
outputs = tuple()
else:
# If the output of builder is not one of the allowed types
# (auxiliary file, tuple of auxiliary files, and None) then
# throw exception.
raise TypeError(f'output type {type(outputs)} from '
f'builder is not allowed.')
# Delete all unnecessary files except inputs and locked files.
afm.clear()
return outputs
def build(self, afm: AuxiliaryFileManager, *inputs: AuxiliaryFile
) -> Tuple[AuxiliaryFile, ...]:
outputs = tuple()
for builder in self.builders:
outputs += builder.build(afm, *inputs)
afm.synchronize(outputs)
# Lock input and stacked output auxiliary files.
for af in inputs + outputs:
af.lock()
afm.clear()
return outputs
def test_shuffling_preserves_contents():
with tempfile.TemporaryDirectory() as tdir, \
AuxiliaryFileManager(f'{tdir}/workspace') as afm:
corpus = afm.create()
with corpus.open('w') as fp:
fp.write('\n'.join([str(i) for i in range(1000)]) + '\n')
# In this case, the size of each chunk is 1 and it implies `complete
# random shuffling`.
with (ShuffleLines(best_seek_cnt=1000,
max_buckets=512).build(afm,
corpus).open('r')) as fp:
assert {int(i) for i in fp.read().split()} == set(range(1000))
# If `best_seek_cnt` is less than the entire text lines, then the
# shuffling would be approximated by using chunks and their buckets.
with (ShuffleLines(best_seek_cnt=100,
max_buckets=512).build(afm,
corpus).open('r')) as fp:
assert {int(i) for i in fp.read().split()} == set(range(1000))
with (ShuffleLines(best_seek_cnt=10,
max_buckets=512).build(afm,
corpus).open('r')) as fp:
assert {int(i) for i in fp.read().split()} == set(range(1000))
# However, if `max_buckets` is less than the optimum bucket size (twice
# of the optimum stride size), then only `max_buckets` of buckets would
# be used. Note that this case leads reduction of randomness.
with (ShuffleLines(best_seek_cnt=10,
max_buckets=64).build(afm, corpus).open('r')) as fp:
assert {int(i) for i in fp.read().split()} == set(range(1000))
def test_builder_splits_corpus_without_loss_of_contents():
with tempfile.TemporaryDirectory() as tdir, \
AuxiliaryFileManager(f'{tdir}/workspace') as afm:
corpus = afm.create()
with corpus.open('w') as fp:
fp.write('\n'.join(str(i) for i in range(1000)))
# Test the splitting builder with various ratios.
tfile, vfile = SplitValidation(val_ratio=0.1).build(afm, corpus)
with tfile.open('r') as tfp, vfile.open('r') as vfp:
assert ([int(s.strip())
for s in vfp.readlines()] == list(range(100)))
assert ([int(s.strip())
for s in tfp.readlines()] == list(range(100, 1000)))
tfile, vfile = SplitValidation(val_ratio=0.27).build(afm, corpus)
with tfile.open('r') as tfp, vfile.open('r') as vfp:
assert ([int(s.strip())
for s in vfp.readlines()] == list(range(270)))
assert ([int(s.strip())
for s in tfp.readlines()] == list(range(270, 1000)))
tfile, vfile = SplitValidation(val_ratio=0.1387).build(afm, corpus)
with tfile.open('r') as tfp, vfile.open('r') as vfp:
assert ([int(s.strip())
for s in vfp.readlines()] == list(range(139)))
assert ([int(s.strip())
for s in tfp.readlines()] == list(range(139, 1000)))
def build(self, afm: AuxiliaryFileManager,
corpus: AuxiliaryFile) -> AuxiliaryFile:
subset = self._create_subset_file(afm, corpus)
# Create WordPiece model with a normalizer and pre-tokenizer. Note that
# BERT-specific normalizer and pre-tokenizer are used in this model.
tokenizer = Tokenizer(WordPiece())
tokenizer.normalizer = BertNormalizer(strip_accents=False)
tokenizer.pre_tokenizer = BertPreTokenizer()
# Train tokenizer model with subset of corpus.
trainer = WordPieceTrainer(vocab_size=self.vocab_size,
min_frequency=2,
show_progress=True,
limit_alphabet=self.limit_alphabet,
special_tokens=[self.unk_token] +
self.special_tokens,
continuing_subword_prefix='##')
tokenizer.train(trainer, [subset.name])
# Save trained vocabulary to an auxiliary output file.
vocab = afm.create()
tokenizer.model.save(os.path.dirname(vocab.name))
os.rename(os.path.join(os.path.dirname(vocab.name), 'vocab.txt'),
vocab.name)
return vocab
def run(self, parent: str):
with AuxiliaryFileManager(parent) as afm:
self.build(afm)
# After running the build pipeline, delete all created dummy files
# even though the remainders would be removed in `__exit__` of the
# manager.
afm.clear()
def build(self, afm: AuxiliaryFileManager,
corpus: AuxiliaryFile) -> AuxiliaryFile:
# Calculate the optimum stride and bucket size.
stride = max(1,
self._total_lines_in_file(corpus) // self.best_seek_cnt)
buckets = [
afm.create() for _ in range(min(stride * 2, self.max_buckets))
]
# Collect the corresponding seeking positions and shuffle them.
offsets = self._collect_seek_offsets(corpus, stride)
random.shuffle(offsets)
with corpus.open('rb') as src, \
AuxiliaryFile.opens(buckets, 'wb') as dsts:
# Create tqdm progress bar with colorful description.
tqdm_iter = tqdm.tqdm(
offsets,
desc=colorful.render('<r>[*]</r> shuffle raw corpus file'))
for offset in tqdm_iter:
src.seek(offset)
for _ in range(stride):
line = src.readline()
if not line:
break
# Add break-line character to the end of text to avoid
# being merged with other line.
line += b'\n' if not line.endswith(b'\n') else b''
# Write the decorated text line to the random bucket for
# ensuring randomness.
dsts[random.randint(0, len(dsts) - 1)].write(line)
# After splitting to the buckets, merge them into a single file.
merged = afm.create()
with merged.open('wb') as dst, \
AuxiliaryFile.opens(buckets, 'rb') as srcs:
for src in srcs:
shutil.copyfileobj(src, dst)
return merged
def test_builder_collects_seeking_positions_correctly():
with tempfile.TemporaryDirectory() as tdir, \
AuxiliaryFileManager(f'{tdir}/workspace') as afm:
# Create an auxiliary file with 1000 dummy lines.
corpus = afm.create()
with corpus.open('w') as fp:
fp.write('hello world!\n' * 1000)
builder = ShuffleLines()
for s in range(1, 200):
assert len(builder._collect_seek_offsets(corpus, s)) == 1000 // s
def test_opening_multiple_auxiliary_files_at_once():
with tempfile.TemporaryDirectory() as tdir, \
AuxiliaryFileManager(f'{tdir}/workspace') as afm:
files = [afm.create() for _ in range(10)]
with AuxiliaryFile.opens(files, 'w') as fps:
for i, fp in enumerate(fps):
fp.write(f'{i}th file')
with AuxiliaryFile.opens(files, 'r') as fps:
for i, fp in enumerate(fps):
assert fp.read() == f'{i}th file'
def test_if_builder_adds_break_lines_automatically():
with tempfile.TemporaryDirectory() as tdir, \
AuxiliaryFileManager(f'{tdir}/workspace') as afm:
files = [afm.create() for _ in range(10)]
with AuxiliaryFile.opens(files, 'w') as fps:
for i, fp in enumerate(fps):
fp.write('\n'.join([str(i) for _ in range(100)]))
with MergeFiles().build(afm, *files).open('r') as fp:
assert (fp.read().split() == [
str(i) for i in range(10) for _ in range(100)
])
def test_merging_files_without_loss_of_contents():
with tempfile.TemporaryDirectory() as tdir, \
AuxiliaryFileManager(f'{tdir}/workspace') as afm:
files = [afm.create() for _ in range(10)]
with AuxiliaryFile.opens(files, 'w') as fps:
for i, fp in enumerate(fps):
fp.write(f'{i}\n' * 100)
with MergeFiles().build(afm, *files).open('r') as fp:
assert (fp.read().split() == [
str(i) for i in range(10) for _ in range(100)
])
def test_afm_creates_files_correctly():
with tempfile.TemporaryDirectory() as tdir:
with AuxiliaryFileManager(f'{tdir}/workspace') as afm:
tfile = afm.create()
with tfile.open('w') as fp:
fp.write('hello world!')
with tfile.open('r') as fp:
assert fp.read() == 'hello world!'
assert os.path.exists(tfile.name)
assert _number_of_files_in_directory(f'{tdir}/workspace') == 1
assert not os.path.exists(f'{tdir}/workspace')
def build(self, afm: AuxiliaryFileManager,
corpus: AuxiliaryFile) -> Tuple[AuxiliaryFile, AuxiliaryFile]:
train_dataset = afm.create()
val_dataset = afm.create()
total_lines = self._total_lines_in_file(corpus)
print(
colorful.render(f'<r>[*]</r> split validation corpus - '
f'<m>{math.ceil(total_lines * self.val_ratio)}'
f'</m> of <m>{total_lines}</m> lines'))
with corpus.open('rb') as src, train_dataset.open('wb') as tdst, \
val_dataset.open('wb') as vdst:
# Write the first `val_ratio` lines to the validation dataset file.
for i, line in enumerate(src):
vdst.write(line)
if i + 1 >= total_lines * self.val_ratio:
break
# After writing the validation dataset, copy the entire rest lines
# to the train dataset.
shutil.copyfileobj(src, tdst)
return train_dataset, val_dataset
def _create_subset_file(self, afm: AuxiliaryFileManager,
af: AuxiliaryFile) -> AuxiliaryFile:
subset = afm.create()
with af.open('rb') as src, subset.open('wb') as dst:
while True:
line = src.readline()
if not line:
break
dst.write(line)
# If total amount of copied data is more than `subset_size`
# then stop copying data to the subset file.
if src.tell() > self.subset_size:
break
return subset
def build(self, afm: AuxiliaryFileManager, *inputs: AuxiliaryFile
) -> AuxiliaryFile:
merged = afm.create()
print(colorful.render(f'<r>[*]</r> merge <m>{len(inputs)}</m> files '
f'into one'))
with merged.open('wb') as dst, \
AuxiliaryFile.opens(inputs, 'rb') as srcs:
for src in srcs:
for line in src:
# Add break-line character to the end of text to avoid
# being merged with other line.
line += b'\n' if not line.endswith(b'\n') else b''
dst.write(line)
return merged
def test_shuffling_without_break_line_in_last():
with tempfile.TemporaryDirectory() as tdir, \
AuxiliaryFileManager(f'{tdir}/workspace') as afm:
corpus = afm.create()
with corpus.open('w') as fp:
# Note that we would not add break-line character to the end of the
# content.
fp.write('\n'.join([str(i) for i in range(1000)]))
with (ShuffleLines(best_seek_cnt=1000,
max_buckets=512).build(afm,
corpus).open('r')) as fp:
assert {int(i) for i in fp.read().split()} == set(range(1000))
with (ShuffleLines(best_seek_cnt=10,
max_buckets=64).build(afm, corpus).open('r')) as fp:
assert {int(i) for i in fp.read().split()} == set(range(1000))
def test_subword_tokenization():
with tempfile.TemporaryDirectory() as tdir, \
AuxiliaryFileManager(f'{tdir}/workspace') as afm:
corpus = afm.create()
with corpus.open('w') as fp:
fp.write(_dummy_corpus_content)
# Train WordPiece vocabulary and tokenize sentences.
vocab = (TrainTokenizer(vocab_size=128,
limit_alphabet=64).build(afm, corpus))
tokenized = (TokenizeSentences(unk_token='[UNK]').build(
afm, corpus, vocab))
# Test if the tokenization is correctly applied to the corpus. Note
# that the tokenizer model will normalize the sentences.
with tokenized.open('r') as fp:
assert (fp.read().strip().replace('##', '').replace(
' ', '') == _dummy_corpus_content.lower().replace(' ', ''))
def test_subset_file_creation():
with tempfile.TemporaryDirectory() as tdir, \
AuxiliaryFileManager(f'{tdir}/workspace') as afm:
corpus = afm.create()
with corpus.open('w') as fp:
fp.write('hello world!\n' * 100)
with (TrainTokenizer(subset_size=1024)._create_subset_file(
afm, corpus).open('r')) as fp:
assert len(fp.readlines()) == 79
with (TrainTokenizer(subset_size=128)._create_subset_file(
afm, corpus).open('r')) as fp:
assert len(fp.readlines()) == 10
with (TrainTokenizer(subset_size=2000)._create_subset_file(
afm, corpus).open('r')) as fp:
assert len(fp.readlines()) == 100
def test_counting_lines_in_file():
with tempfile.TemporaryDirectory() as tdir, \
AuxiliaryFileManager(f'{tdir}/workspace') as afm:
builder = SplitValidation()
corpus = afm.create()
# Test for the case of 10 lines.
with corpus.open('w') as fp:
fp.write('hello world!\n' * 10)
assert builder._total_lines_in_file(corpus) == 10
# Test for the case of 100 lines.
with corpus.open('w') as fp:
fp.write('hello world!\n' * 100)
assert builder._total_lines_in_file(corpus) == 100
# Test for the case of 1548 lines.
with corpus.open('w') as fp:
fp.write('hello world!\n' * 1548)
assert builder._total_lines_in_file(corpus) == 1548
def test_training_wordpiece_tokenizer():
with tempfile.TemporaryDirectory() as tdir, \
AuxiliaryFileManager(f'{tdir}/workspace') as afm:
corpus = afm.create()
with corpus.open('w') as fp:
fp.write(_dummy_corpus_content)
# Train WordPiece tokenizer and get vocabulary file.
vocab = (TrainTokenizer(vocab_size=128,
limit_alphabet=64,
unk_token='[UNK]').build(afm, corpus))
# Read subwords from the vocabulary file.
with vocab.open('r') as fp:
words = fp.readlines()
# Check if the number of total words equals to vocabulary size and the
# vocabulary contains unknown token.
assert len(words) == 128
assert words[0].strip() == '[UNK]'
def test_afm_ignores_locked_files_in_clearing():
with tempfile.TemporaryDirectory() as tdir:
with AuxiliaryFileManager(f'{tdir}/workspace') as afm:
for _ in range(10):
afm.create()
assert _number_of_files_in_directory(f'{tdir}/workspace') == 10
for _ in range(5):
afm.create().lock()
assert _number_of_files_in_directory(f'{tdir}/workspace') == 15
# All auxiliary files except locked ones would be removed. Note
# that the remainders are unlocked at this point.
afm.clear()
assert _number_of_files_in_directory(f'{tdir}/workspace') == 5
# As mentioned above, all unlocked files would be remove at this
# point.
afm.clear()
assert _number_of_files_in_directory(f'{tdir}/workspace') == 0
assert not os.path.exists(f'{tdir}/workspace')
def run(self, parent: str):
"""Execute the builder.
All builders can be executed directly and independently, without any
input auxiliary files. We recommend to execute builders with
miscellaneous ones (e.g.
:class:`ImportFrom <langumo.building.miscellaneous.ImportFrom>` and
:class:`ExportTo <langumo.building.miscellaneous.ExportTo>`) to pass
build inputs correctly.
Args:
parent: parent workspace directory which will be used for
containing all auxiliary files.
"""
with AuxiliaryFileManager(parent) as afm:
self.build(afm)
# After running the build pipeline, delete all created dummy files
# even though the remainders would be removed in `__exit__` of the
# manager.
afm.clear()
def build(self, afm: AuxiliaryFileManager, corpus: AuxiliaryFile,
vocab: AuxiliaryFile) -> AuxiliaryFile:
total_lines = self._total_lines_in_file(corpus)
# Create WordPiece model and add special tokens. Note that `unk_token`
# is also a special token.
tokenizer = Tokenizer(WordPiece(vocab.name, unk_token=self.unk_token))
tokenizer.add_special_tokens(self.special_tokens + [self.unk_token])
# Use BERT-specific normalizer, pre-tokenizer and decoder.
tokenizer.normalizer = BertNormalizer(strip_accents=False)
tokenizer.pre_tokenizer = BertPreTokenizer()
tokenizer.decoder = WordPieceDecoder(prefix='##')
tokenized = afm.create()
with corpus.open('r') as src, tokenized.open('w') as dst:
# Create tqdm progress bar with colorful description.
tqdm_iter = tqdm.tqdm(src,
desc=colorful.render(
'<r>[*]</r> tokenize sentences with '
'<g>WordPiece</g> model'),
total=total_lines)
batch_lines = []
for line in tqdm_iter:
batch_lines.append(line)
# Encode the grouped batch sentences and write the tokenized
# sentences to the auxiliary output file.
if len(batch_lines) > self.batch_size:
for t in tokenizer.encode_batch(batch_lines):
dst.write(' '.join(t.tokens) + '\n')
batch_lines.clear()
# Encode the remainders and write to the output file.
if batch_lines:
for t in tokenizer.encode_batch(batch_lines):
dst.write(' '.join(t.tokens) + '\n')
return tokenized
def test_afm_handles_files_separately_by_level():
with tempfile.TemporaryDirectory() as tdir:
with AuxiliaryFileManager(f'{tdir}/workspace') as afm:
# Create auxiliary files in level 0.
for _ in range(10):
afm.create()
assert _number_of_files_in_directory(f'{tdir}/workspace') == 10
with afm.auxiliary_scope():
# Create auxiliary files in level 1.
for _ in range(5):
afm.create()
assert _number_of_files_in_directory(f'{tdir}/workspace') == 15
# Remove the auxiliary files with level 1.
afm.clear()
assert _number_of_files_in_directory(f'{tdir}/workspace') == 10
# Create auxiliary files and lock some of them.
for _ in range(2):
afm.create()
for _ in range(3):
afm.create().lock()
assert _number_of_files_in_directory(f'{tdir}/workspace') == 15
with afm.auxiliary_scope():
# Create auxiliary files in level 2.
for _ in range(5):
afm.create()
assert (_number_of_files_in_directory(f'{tdir}/workspace')
== 20)
# Not only non-locked files but also sub-level auxiliary files
# would be removed.
afm.clear()
assert _number_of_files_in_directory(f'{tdir}/workspace') == 13
afm.clear()
assert _number_of_files_in_directory(f'{tdir}/workspace') == 0
def build(self, afm: AuxiliaryFileManager,
raw: AuxiliaryFile) -> AuxiliaryFile:
parsed = afm.create()
self.parser.prepare(raw)
# Create processes for parsing texts in parallel and a process for
# collecting the parsed texts and saving to the auxiliary file.
from_queue, to_queue = Queue(), Queue()
parsers = [
Process(target=self._parse_worker,
args=(from_queue, to_queue),
daemon=True) for _ in range(self.num_workers)
]
collector = Process(target=self._collect_worker,
args=(parsed, to_queue),
daemon=True)
# Start the processes.
print(
colorful.render(f'<r>[*]</r> parse raw-formatted corpus file '
f'with <g>{self.parser.__class__.__name__}</g>'))
for p in parsers:
p.start()
collector.start()
# Feed the extracted raw-formatted document to each parser process.
for document in self.parser.extract(raw):
from_queue.put(document)
for _ in range(self.num_workers):
from_queue.put(None)
# Wait for terminating the processes.
for p in parsers:
p.join()
collector.join()
return parsed
def test_formatted_file_parsing():
with tempfile.TemporaryDirectory() as tdir, \
AuxiliaryFileManager(f'{tdir}/workspace') as afm:
corpus = afm.create()
with corpus.open('w') as fp:
fp.write(_dummy_corpus_content)
with (ParseRawFile(simple_parser(),
lang='en',
min_len=16,
max_len=512,
newline='[NEWLINE]',
num_workers=2).build(afm, corpus).open('r')) as fp:
assert ({
s.strip()
for s in fp
} == {
'Wikipedia is a multilingual online encyclopedia created '
'and maintained as an open collaboration project by a '
'community of volunteer editors using a wiki-based '
'editing system. It is the largest and most popular '
'general reference work on the World Wide Web. It is '
'also one of the 15 most popular websites ranked by '
'Alexa, as of August 2020. It features exclusively free '
'content and no commercial ads. It is hosted by the '
'Wikimedia Foundation, a non-profit organization funded '
'primarily through donations. [NEWLINE] Wikipedia was '
'launched on January 15, 2001, and was created by Jimmy '
'Wales and Larry Sanger.',
'Sanger coined its name as a portmanteau of the terms '
'"wiki" and "encyclopedia". Initially an '
'English-language encyclopedia, versions of Wikipedia in '
'other languages were quickly developed. With 6.1 '
'million articles, the English Wikipedia is the largest '
'of the more than 300 Wikipedia encyclopedias. Overall, '
'Wikipedia comprises more than 54 million articles '
'attracting 1.5 billion unique visitors per month.',
'In 2005, Nature published a peer review comparing 42 '
'hard science articles from Encyclopædia Britannica and '
'Wikipedia and found that Wikipedia\'s level of accuracy '
'approached that of Britannica, although critics '
'suggested that it might not have fared so well in a '
'similar study of a random sampling of all articles or '
'one focused on social science or contentious social '
'issues. The following year, Time stated that the '
'open-door policy of allowing anyone to edit had made '
'Wikipedia the biggest and possibly the best '
'encyclopedia in the world, and was a testament to the '
'vision of Jimmy Wales.',
'Wikipedia has been criticized for exhibiting systemic '
'bias and for being subject to manipulation and spin in '
'controversial topics; Edwin Black has criticized '
'Wikipedia for presenting a mixture of "truth, half '
'truth, and some falsehoods". Wikipedia has also been '
'criticized for gender bias, particularly on its '
'English-language version, where the dominant majority '
'of editors are male. However, edit-a-thons have been '
'held to encourage female editors and increase the '
'coverage of women\'s topics. Facebook announced that by '
'2017 it would help readers detect fake news by '
'suggesting links to related Wikipedia articles.',
'YouTube announced a similar plan in 2018.'
})
def test_afm_context_manager():
with tempfile.TemporaryDirectory() as tdir:
with AuxiliaryFileManager(f'{tdir}/workspace'):
assert os.path.exists(f'{tdir}/workspace')
assert not os.path.exists(f'{tdir}/workspace')
