def makeLatexTab(snps):
libplot.writeDocumentStart(sys.stdout)
title = ""
tabHeader(sys.stdout, title)
tab(sys.stdout, snps)
captionStr = ""
label = ""
tableCloser(sys.stdout, captionStr, label)
libplot.writeDocumentEnd(sys.stdout)
def makeLatexTab(stats1, outfile):
f = open(outfile, 'w')
libplot.writeDocumentStart(f)
tabHeader(f)
tab(f, stats1)
captionStr = ""
label = ""
libplot.tableCloser(f, captionStr, label)
libplot.writeDocumentEnd(f)
f.close()
def drawCompareCoverageTab( options, stats, sample2repeat ):
prefix = "cmpCoverageTab"
outfile = os.path.join( options.outdir, "%s%s_%s.tex" %(prefix, stats[0].referenceName, stats[0].otherReferenceName) )
f = open(outfile, 'w')
libplot.writeDocumentStart(f)
tabHeader(f, stats[0].otherReferenceName, stats[0].referenceName)
tab(f, stats, sample2repeat)
captionStr = ""
label = ""
libplot.tableCloser(f, captionStr, label)
libplot.writeDocumentEnd(f)
f.close()
def makeLatexTab(data, outfile):
#data{ sample: [numreads, ubases, repeat, snprate, totalsnprate] }
f = open(outfile, 'w')
libplot.writeDocumentStart(f)
#title = "Some title"
tabHeader(f)
#tabHeader(f, title)
tab( f, data )
captionStr = ""
label = ""
libplot.tableCloser(f, captionStr, label)
libplot.writeDocumentEnd(f)
f.close()
def makeLatexTab( outfile, exps, rexps ):
f = open(outfile, 'w')
libplot.writeDocumentStart( f )
title = "Mapping Stats"
tabheader ( f, title )
samples = []
for s in exps:
if s != 'average':
samples.append(s)
samples.sort()
samples.append('average')
tab( f, exps, rexps, samples )
captionStr = ""
label = ""
libplot.tableCloser(f, captionStr, label)
libplot.writeDocumentEnd( f )
f.close()