print "\n"
comm_str, file_csv, file_matr_glob, file_prefix, file_listmatch, \
NA_WARN, ExternLabsOK, SWITCH_DoGraph, IMG_type, N_FACS, N_LOADS, \
fact_lab_pref, Percentile, N_iter, \
list_model, file_listmodel = main(sys.argv[1:])
if not(NA_WARN):
print "++ Won't warn about NAs in the data."
arg_list = sys.argv
str_sep = ' '
arg_str = str_sep.join(arg_list)
### get list of CSV file data
csv_raw, csv_colvars = GR.LoadInCSV(file_csv)
csv_data, csv_coltypes = GR.ConvertCSVfromStr(csv_raw, csv_colvars,NA_WARN)
csv_subj = [x[0] for x in csv_data]
## For VAR lists
# get file list from either of two ways.
var_sublist = []
if file_listmodel:
var_sublist = GR.ReadSection_and_Column(file_listmodel, 0)
elif list_model:
var_sublist = list_model.split()
### NET/GRID-- want col [1] of listfile, if it's there
grid_subj = []
if file_matr_glob or file_listmatch:
for x in par_list:
if not(full_par_list.__contains__(x)):
print "*+ Warning! Chosen parameter '%s' does not appear" % \
(x),
print "to be listed in the log file! "
print "\t -> For now, will leave in the parameter list,",
print "but perhaps check spelling?"
# Sep,2015: allow subnetwork, by making subtable and using that
if pref_subnet:
okok = GR.MakeSubTable(file_table, pref_subnet, roi_list)
file_table = pref_subnet
tab_raw, tab_colvars = GR.LoadInTable(file_table)
tab_data, tab_coltypes = GR.ConvertCSVfromStr(tab_raw, tab_colvars, NA_WARN)
# Now checking about interactions
var_iscateg, var_isinterac, Ninter = GR.CheckFor_Cats_and_Inters( tab_data,
tab_colvars,
tab_coltypes,
var_list )
# allow parsing of subset of categories
if file_listmodel:
if GR.IsFirstUncommentedSection_Multicol(file_listmodel):
print "Parsing var list file..."
var_iscateg, var_isinterac = GR.Pars_CatVars_in_Listfile(
file_listmodel,
par_list,
var_iscateg,