arg_list = sys.argv
str_sep = ' '
arg_str = str_sep.join(arg_list)
### get list of CSV file data
csv_raw, csv_colvars = GR.LoadInCSV(file_csv)
csv_data, csv_coltypes = GR.ConvertCSVfromStr(csv_raw, csv_colvars,NA_WARN)
csv_subj = [x[0] for x in csv_data]
## For VAR lists
# get file list from either of two ways.
var_sublist = []
if file_listmodel:
var_sublist = GR.ReadSection_and_Column(file_listmodel, 0)
elif list_model:
var_sublist = list_model.split()
### NET/GRID-- want col [1] of listfile, if it's there
grid_subj = []
if file_matr_glob or file_listmatch:
grid_data, grid_subj = GR.GroupListOfFullMatrs(file_matr_glob, \
file_listmatch, \
0)
if len(grid_subj)==0:
print "** ERROR: Ended up with no subjects when reading '%s'." \
% file_matr_glob
sys.exit(1)
par_str, FS, DO_COLORBAR, N_CBAR_INT, FTYPE, DO_PLOT, \
TIGHT_LAY, MATDPI, MAT_X, MAT_Y, OUT_GRID, MATMIN_str, MATMAX_str, \
SPEC_FORM, MAP_of_COL, DO_hold_image, WIDTH_CBAR_PERC, LAB_SIZE_FONT, \
DO_XTICK_LABS = main(sys.argv[1:])
# parameter names
if par_str:
par_list = par_str.split()
USER_LIST = 1
else:
print "** Error! Got no parameters."
sys.exit(5)
# get file list from either of two ways.
if file_listmatch:
list_all = GR.ReadSection_and_Column(file_listmatch, 0)
elif file_matr_glob:
list_all = glob(file_matr_glob)
else:
print "** Error! Cannot read in matrix files."
sys.exit(4)
if not (list_all):
print "** Error! Could not find/read in any matrix files."
sys.exit(4)
# this one gets the matched pair name.
if GR.IsFirstUncommentedSection_Multicol(file_listmatch):
list_all_out = GR.ReadSection_and_Column(file_listmatch, 1)
else:
# just parsing off endings, attaching par+postfix later
file_listpars, SWITCH_posthoc, comm_str, NA_WARN, CAT_PAIR_COMP \
= main(sys.argv[1:])
if not(NA_WARN):
print "++ Won't warn about NAs in the data."
#arg_list = sys.argv
#str_sep = ' '
#arg_str = str_sep.join(arg_list)
arg_str = "fat_mvm_scripter.py" #sys.argv[0]
arg_str+= ' '+comm_str
## For VAR lists
# get file list from either of two ways.
if file_listmodel:
var_list = GR.ReadSection_and_Column(file_listmodel, 0)
elif list_model:
var_list = list_model.split()
else:
print "** Error! Cannot read in model values."
sys.exit(4)
##### don't do this here, because of interactions! Nvar = len( var_list )
## For ROI lists
if file_listrois:
roi_list = GR.ReadSection_and_Column(file_listrois, 0)
elif userlist_roi:
roi_list = userlist_roi.split()
else:
roi_list = GR.GetFromLogFile(file_log, GR.LOG_LABEL_roilist)