def cb_exec_script(self):
fmesg = ''
if not self.atest: fmesg = '** no script class for running script'
elif self.status<1: fmesg = '** need to first generate processing script'
if fmesg != '':
QLIB.guiError('Error', fmesg, self)
return
# make sure there is a script to execute
fname = self.atest.proc_dir_filename('file_proc')
if not fname:
self.update_AP_warn_window('** script file not set')
return
elif not os.path.isfile(fname):
self.update_AP_warn_window('** script file not found: %s\n' % fname)
return
self.atest.nuke_old_results() # get rid of any previous results
# start a new window?
if self.gvars.valid('SPW'):
self.gvars.SPW.close()
del(self.gvars.SPW)
# actually run script, piping output if we have an output file
sname = self.atest.rvars.file_proc
oname = self.atest.rvars.output_proc
command= 'tcsh -xef %s' % sname
if oname: command = '%s |& tee %s' % (command, oname)
self.gvars.SPW = QLIB.TcshCommandWindow(command,
dir=self.atest.cvars.proc_dir, parent=self)
self.gvars.SPW.show()
self.status = 2
def update_uvars_from_gui(self, warn=0):
"""set what we can, if warn, report error
note that most uvars are Lines, and are updated upon edit
return 0 on success, 1 on error"""
if show_func_seq: print '=== xK ==='
# any first variables to require?
if self.uvars.is_empty('program'):
if warn: QLIB.guiError('Error', "** program name must be set", self)
return 1
# then process tables
if self.update_uvars_from_tables(): return 1
# ---------------------------------------------------------------
# then any other vars (most are Lines, which are applied on edit)
# extra tt and MM options:
otext = str(self.gvars.TE_ttest.toPlainText())
self.uvars.tt_options = otext.split()
otext = str(self.gvars.TE_MEMA.toPlainText())
self.uvars.MM_options = otext.split()
if self.set_pdir:
# proc dir should read: tool_results/tool.0001.align_test
pdir = SUBJ.get_def_tool_path(self.uvars.program,
top_dir='group_results', prefix='test',
keep_if_missing=self.cvars.val('results_dir'))
if self.set_cvar('proc_dir', pdir):
print '-- setting proc_dir to %s' % pdir
self.gvars.act_exec_script.setEnabled(False)
return 0
def check_line_against_list(self, line, lname, tlist, tdef=0):
"""if line text is not in tlist, show error and reset to tlist[tdef]
"""
if show_func_seq: print '=== N ==='
txt = str(line.text())
if txt not in tlist:
reset_val = tlist[tdef]
emesg = "%s '%s' not in %s\n(resetting to %s)" \
% (lname, txt, tlist, reset_val)
QLIB.guiError('Error', emesg, self)
line.setText(reset_val)
return 1
else: self.set_uvar(lname, txt)
return 0
def cb_exec_script(self):
fmesg = ''
if not self.atest: fmesg = '** no script class for running script'
elif self.status < 1:
fmesg = '** need to first generate processing script'
if fmesg != '':
QLIB.guiError('Error', fmesg, self)
return
# make sure there is a script to execute
fname = self.atest.proc_dir_filename('file_proc')
if not fname:
self.update_AP_warn_window('** script file not set')
return
elif not os.path.isfile(fname):
self.update_AP_warn_window('** script file not found: %s\n' %
fname)
return
self.atest.nuke_old_results() # get rid of any previous results
# start a new window?
if self.gvars.valid('SPW'):
self.gvars.SPW.close()
del (self.gvars.SPW)
# actually run script, piping output if we have an output file
sname = self.atest.rvars.file_proc
oname = self.atest.rvars.output_proc
command = 'tcsh -xef %s' % sname
if oname: command = '%s |& tee %s' % (command, oname)
self.gvars.SPW = QLIB.TcshCommandWindow(command,
dir=self.atest.cvars.proc_dir,
parent=self)
self.gvars.SPW.show()
self.status = 2
def update_error_window(self, text, title='ERROR - cannot proceed'):
if show_func_seq: print '=== xF ===' # rcr - not called
QLIB.guiError(title, text, self)
def update_error_window(self, text, title='ERROR - cannot proceed'):
QLIB.guiError(title, text, self)
def update_error_window(self, text, title='ERROR - cannot proceed'):
QLIB.guiError(title, text, self)