def atomize(self,ticket,xmlFile,atomize):
reaction = 'config/reactionDefinitions.json'
print ticket
try:
result = libsbml2bngl.readFromString(xmlFile,
reaction,False,None,atomize)
self.addToDict(ticket,result)
print 'sucess',result
except:
self.addToDict(ticket,-5)
print 'failure'
def atomize(self, bxmlFile,atomize=False,reaction='config/reactionDefinitions.json',species=None):
counter = next_id()
xmlFile = bxmlFile.data
species = 'config/' + species
reaction = 'config/reactionDefinitions.json'
result = libsbml2bngl.readFromString(xmlFile,
reaction,True,None,atomize)
return result
