def main():
sh.init(libwise.get_version(), USAGE)
pa = sh.get_opt_bool('pa', 'p')
fit = sh.get_opt_bool('fit', 'f')
num = sh.get_opt_bool('num', 'n')
min_link_size = sh.get_opt_value('min-link-size', 'm', default=2)
sh.check(min_link_size, nputils.is_str_number, "min-link-size must be an integer")
min_link_size = float(min_link_size)
args = sh.get_args(min_nargs=2)
name = args[0]
ctx = actions.load(name)
if ctx is None:
print "No results saved with name %s" % name
sh.usage(True)
scales = args[1]
try:
scales = nputils.str2floatlist(scales)
except:
print "Error: invalid scales. Available scales: %s" % ctx.result.get_scales()
sh.usage(True)
fit_fct = None
if fit:
fit_fct = nputils.LinearFct
fit_result = wise.tasks.plot_separation_from_core(ctx, scales=scales, num=num,
min_link_size=min_link_size, fit_fct=fit_fct, pa=pa)
if fit:
for link, fit_fct in fit_result.items():
print "Fit result for link %s: %.2f +- %.2f mas / year" % (link.get_id(), fit_fct.a, fit_fct.ea)
def main():
sh.init(libwise.get_version(), USAGE)
args = sh.get_args(min_nargs=1)
config = actions.get_config(True)
ctx = wise.AnalysisContext(config)
actions.select_files(ctx, args)
if len(ctx.files) == 0:
sys.exit(0)
wise.tasks.detection_all(ctx)
str2vector = lambda s: [float(k) for k in re.findall("[-0-9.]+", s)]
check = lambda s: len(wise.tasks._get_scales(str2vector(s), ctx.result.get_scales())) > 0
txt ="View scales (available: %s) (press enter to leave):" % ctx.result.get_scales()
while True:
scales = sh.ask(txt, check_fct=check, default=[])
if len(scales) == 0:
break
wise.tasks.view_wds(ctx, scales=str2vector(scales))
save = sh.askbool("Save the result ?")
if save:
name = str(sh.ask("Name (default=result):", default='result'))
wise.tasks.save(ctx, name)
def main():
sh.init(libwise.get_version(), USAGE)
args = sh.get_args(min_nargs=1)
config = actions.get_config(True)
ctx = wise.AnalysisContext(config)
actions.select_files(ctx, args)
if len(ctx.files) == 0:
sys.exit(0)
wise.tasks.match_all(ctx)
check = lambda s: nputils.is_str_number(s) and float(s) in ctx.result.get_scales()
txt ="View scales (available: %s) (press enter to leave):" % ctx.result.get_scales()
while True:
scale = float(sh.ask(txt, check_fct=check, default=0))
if scale == 0:
break
wise.tasks.view_displacements(ctx, scale)
save = sh.askbool("Save the result ?")
if save:
name = str(sh.ask("Name (default=result):", default='result'))
wise.tasks.save(ctx, name)
def main():
sh.init(libwise.get_version(), USAGE)
min_link_size = sh.get_opt_value('min-link-size', 'm', default=2)
sh.check(min_link_size, nputils.is_str_number,
"min-link-size must be an integer")
min_link_size = float(min_link_size)
args = sh.get_args(min_nargs=2)
name = args[0]
ctx = actions.load(name)
if ctx is None:
print "No results saved with name %s" % name
sh.usage(True)
scales = args[1]
try:
scales = nputils.str2floatlist(scales)
except:
print "Error: invalid scales. Available scales: %s" % ctx.result.get_scales(
)
sh.usage(True)
wise.tasks.view_links(ctx, scales=scales, min_link_size=min_link_size)
def main():
sh.init(libwise.get_version(), USAGE)
args = sh.get_args(min_nargs=1)
img = imgutils.guess_and_open(args[0])
editor = PolyRegionEditor.PolyRegionEditor(img, current_folder=os.path.dirname(img.file))
if len(args) >= 2:
poly_region = imgutils.PolyRegion.from_file(args[1], img.get_coordinate_system())
editor.load_poly_region(poly_region)
editor.start()
def main():
sh.init(libwise.get_version(), USAGE)
velocity = sh.get_opt_bool('velocity', 'V')
args = sh.get_args(min_nargs=1)
config = actions.get_config(False)
ctx = wise.AnalysisContext(config)
actions.select_files(ctx, args)
if velocity:
wise.tasks.info_files_delta(ctx)
else:
wise.tasks.info_files(ctx)
def main():
sh.init(libwise.get_version(), USAGE)
start_date = get_date(sh.get_opt_value('start-date', 's'), 'start-date')
end_date = get_date(sh.get_opt_value('end-date', 'e'), 'end-date')
filter_dates = [get_date(k, 'filter-date') for k in sh.get_opt_value('filter-date', 'f', multiple=True)]
output_filename = sh.get_opt_value('output', 'o', default='files')
args = sh.get_args(min_nargs=1)
files = imgutils.fast_sorted_fits(args, start_date=start_date,
end_date=end_date, filter_dates=filter_dates)
print "Outputing %s files in '%s'" % (len(files), output_filename)
with open(output_filename, 'w') as f:
f.write("\n".join(files) + "\n")
def main():
sh.init(libwise.get_version(), USAGE)
nsigma = float(sh.get_opt_value('nsigma', 'n', default=0))
nsigma_connected = sh.get_opt_bool('nsigma_connected', 'c')
output_filename = sh.get_opt_value('output', 'o', default='stack_img.fits')
args = sh.get_args(min_nargs=1)
config = actions.get_config(False)
ctx = wise.AnalysisContext(config)
actions.select_files(ctx, args)
stack_img = ctx.build_stack_image(preprocess=False, nsigma=nsigma, nsigma_connected=nsigma_connected)
stack_img.save(output_filename)
print "Stacked images save to %s" % output_filename
def main():
sh.init(libwise.get_version(), USAGE)
args = sh.get_args(min_nargs=2)
name = args[0]
ctx = actions.load(name)
if ctx is None:
print "No results saved with name %s" % name
sh.usage(True)
scales = args[1]
try:
scales = nputils.str2floatlist(scales)
except:
print "Error: invalid scales. Availables scales: %s" % ctx.result.get_scales()
sh.usage(True)
print "Plotting features from scales %s" % scales
wise.tasks.view_all_features(ctx, scales)
def main():
sh.init(libwise.get_version(), USAGE)
preprocess = not sh.get_opt_bool('no-crop', 'n')
align = not sh.get_opt_bool('no-align', None)
show_mask = sh.get_opt_bool('show-mask', 'm')
region_files = sh.get_opt_value('reg-file', 'r', multiple=True)
regions = []
try:
regions = [imgutils.Region(file) for file in region_files]
except:
print "Error: failed to read a region file"
sh.usage(True)
args = sh.get_args(min_nargs=1)
config = actions.get_config(False)
ctx = wise.AnalysisContext(config)
actions.select_files(ctx, args)
wise.tasks.view_all(ctx, preprocess=preprocess, show_regions=regions,
show_mask=show_mask, align=align)
def main():
sh.init(libwise.get_version(), USAGE)
min_link_size = sh.get_opt_value('min-link-size', 'm', default=2)
sh.check(min_link_size, nputils.is_str_number, "min-link-size must be an integer")
min_link_size = float(min_link_size)
args = sh.get_args(min_nargs=2)
name = args[0]
ctx = actions.load(name)
if ctx is None:
print "No results saved with name %s" % name
sh.usage(True)
scales = args[1]
try:
scales = nputils.str2floatlist(scales)
except:
print "Error: invalid scales. Available scales: %s" % ctx.result.get_scales()
sh.usage(True)
wise.tasks.view_links(ctx, scales=scales, min_link_size=min_link_size)
def main():
sh.init(libwise.get_version(), USAGE)
args = sh.get_args(min_nargs=0)
config = actions.get_config(True)
if len(args) == 0 or args[0] in ['get', 'show']:
if len(args) < 2:
print config.values()
elif '.' in args[1]:
section_name, option = args[1].split('.', 2)
section = get_section(section_name, config)
check_option(section, option)
print '%s: %s' % (args[1], section.get(option, encode=True))
else:
section = get_section(args[1], config)
print section.values()
elif args[0] == 'set':
for arg in args[1:]:
if arg == 'matcher.delta_range_filter':
delta_range_filter_handler(config)
continue
try:
full_option, value = arg.split('=', 2)
section_name, option = full_option.split('.', 2)
except:
print "Error: setting option should be of the form SECTION.OPTION=VALUE\n"
sh.usage(True)
section = get_section(section_name, config)
check_option(section, option)
print "Setting %s to %s" % (full_option, value)
section.set(option, value, decode=True)
if len(args[1:]) > 0:
config.to_file(actions.CONFIG_FILE)
print "Configuration saved"
elif args[0] == 'doc':
if len(args) == 1:
print config.doc()
elif '.' in args[1]:
section_name, option = args[1].split('.', 2)
section = get_section(section_name, config)
check_option(section, option)
print "Documentation of %s: %s" % (args[1], section.get_doc(option))
else:
section = get_section(args[1], config)
print section.doc()
elif args[0] == 'restore':
if len(args) != 2 or not os.path.isfile(args[1]):
print "Error: an existing CONFIG_FILE is necessary\n"
sh.usage(True)
try:
config.from_file(args[1])
config.to_file(actions.CONFIG_FILE)
except:
print "Error: restoring configuration from %s failed\n" % args[1]
raise
print "Configuration restored from %s" % args[1]
else:
print "Error: Action not possible\n"
sh.usage(True)
'''
Created on Jun 11, 2012
@author: fmertens
'''
import libwise
import glob
from setuptools import setup, find_packages
setup(
name = 'libwise',
version = '%s' % libwise.get_version(),
description = 'Various utilities for the WISE package',
url = 'https://github.com/flomertens/libwise',
author = 'Florent Mertens',
author_email = '*****@*****.**',
license='GPL2',
include_package_data=True,
packages=find_packages(),
scripts=glob.glob('scripts/*')
)