def test_source_plates_from_destination_add_to_warehouse(
app,
run_id,
destination_barcode,
samples_from_cherrytrack_into_mongo,
mocked_responses,
source_plates,
cherrytrack_mock_destination_plate,
cherrytrack_destination_plate_response,
):
with app.app_context():
instance = SourcePlatesFromDestination(
WellsFromDestination(PlateBarcode({FIELD_EVENT_BARCODE: destination_barcode}))
)
message = WarehouseMessage("mytype", "myuuid", "at some point")
instance.add_to_warehouse_message(message)
assert message._subjects == [
{
"role_type": "cherrypicking_source_labware",
"subject_type": "plate",
"friendly_name": "plate_123",
"uuid": "a17c38cd-b2df-43a7-9896-582e7855b4cc",
}
]
def initialize_event(self, params: Dict[str, str]) -> None:
super().initialize_event(params=params)
self._event_type = params["event_type"]
self.properties["plate_barcode"] = PlateBarcode(params)
self.properties["failure_type"] = FailureType(params)
self.properties["user_id"] = UserID(params)
for property_name in ["plate_barcode", "failure_type", "user_id"]:
self.properties[property_name].is_valid()
self.properties["destination_plate"] = self.properties["plate_barcode"]
self.properties["wells"] = WellsFromDestination(
self.properties["plate_barcode"])
self.properties["source_plates"] = SourcePlatesFromDestination(
self.properties["wells"])
self.properties["samples"] = SamplesFromDestination(
self.properties["wells"])
self.properties["samples_with_cog_uk_id"] = SamplesWithCogUkId(
self.properties["samples"])
self.properties["controls"] = ControlsFromDestination(
self.properties["wells"])
self.properties["run_id"] = RunIDFromWells(self.properties["wells"])
self.properties["run_info"] = RunInfo(self.properties["run_id"])
self.properties["automation_system_name"] = AutomationSystemName(
self.properties["run_info"])
self.properties["robot_uuid"] = RobotUUID(
self.properties["automation_system_name"])
def test_source_plates_from_destination_value_gets_value(
app,
run_id,
destination_barcode,
samples_from_cherrytrack_into_mongo,
mocked_responses,
source_plates,
cherrytrack_mock_destination_plate,
cherrytrack_destination_plate_response,
):
with app.app_context():
val = SourcePlatesFromDestination(
WellsFromDestination(PlateBarcode({FIELD_EVENT_BARCODE: destination_barcode}))
).value
for elem in val:
del elem["_id"]
assert val == [
{"Lab ID": "lab_1", "barcode": "plate_123", "lh_source_plate_uuid": "a17c38cd-b2df-43a7-9896-582e7855b4cc"}
]