def _lab_data(self):
""" Returns a dictionary that represents the lab object
Keys: obj, title, url, address, confidence, accredited,
accreditation_body, accreditation_logo, logo
"""
portal = self.context.portal_url.getPortalObject()
lab = self.context.bika_setup.laboratory
lab_address = lab.getPostalAddress() \
or lab.getBillingAddress() \
or lab.getPhysicalAddress()
if lab_address:
_keys = ['address', 'city', 'state', 'zip', 'country']
_list = ["<div>%s</div>" % lab_address.get(v) for v in _keys
if lab_address.get(v)]
lab_address = "".join(_list)
else:
lab_address = ''
return {'obj': lab,
'title': to_utf8(lab.Title()),
'url': to_utf8(lab.getLabURL()),
'address': to_utf8(lab_address),
'confidence': lab.getConfidence(),
'accredited': lab.getLaboratoryAccredited(),
'accreditation_body': to_utf8(lab.getAccreditationBody()),
'accreditation_logo': lab.getAccreditationBodyLogo(),
'logo': "%s/logo_print.png" % portal.absolute_url()}
def _client_data(self, ar):
data = {}
client = ar.aq_parent
if client:
data['obj'] = client
data['id'] = client.id
data['url'] = client.absolute_url()
data['name'] = to_utf8(client.getName())
data['phone'] = to_utf8(client.getPhone())
data['fax'] = to_utf8(client.getFax())
client_address = client.getPostalAddress()
if not client_address:
# Data from the first contact
contact = self.getAnalysisRequest().getContact()
if contact and contact.getBillingAddress():
client_address = contact.getBillingAddress()
elif contact and contact.getPhysicalAddress():
client_address = contact.getPhysicalAddress()
if client_address:
_keys = ['address', 'city', 'state', 'zip', 'country']
_list = ["<div>%s</div>" % client_address.get(v) for v in _keys
if client_address.get(v)]
client_address = "".join(_list)
else:
client_address = ''
data['address'] = to_utf8(client_address)
return data
def __call__(self, value, *args, **kwargs):
instance = kwargs['instance']
translate = getToolByName(instance, 'translation_service').translate
# remove spaces from formatted
IBAN = ''.join(c for c in value if c.isalnum())
IBAN = IBAN[4:] + IBAN[:4]
country = IBAN[-4:-2]
if country not in country_dic:
msg = _('Unknown IBAN country %s' % country)
return to_utf8(translate(msg))
length_c, name_c = country_dic[country]
if len(IBAN) != length_c:
diff = len(IBAN) - length_c
msg = _('Wrong IBAN length by %s: %s' %
(('short by %i' % -diff) if diff < 0 else
('too long by %i' % diff), value))
return to_utf8(translate(msg))
# Validating procedure
elif int("".join(str(letter_dic[x]) for x in IBAN)) % 97 != 1:
msg = _('Incorrect IBAN number: %s' % value)
return to_utf8(translate(msg))
else:
# Accepted:
return True
def __call__(self, value, *args, **kwargs):
instance = kwargs['instance']
fieldname = kwargs['field'].getName()
request = kwargs.get('REQUEST', {})
form = request.form
form_value = form.get(fieldname)
translate = getToolByName(instance, 'translation_service').translate
# bsc = getToolByName(instance, 'bika_setup_catalog')
# ResultValue must always be a number
for field in form_value:
try:
float(field['ResultValue'])
except:
return to_utf8(
translate(
_("Validation failed: "
"Result Values must be numbers")))
if 'ResultText' not in field:
return to_utf8(
translate(
_("Validation failed: Result Text cannot be blank")))
return True
def _lab_data(self):
""" Returns a dictionary that represents the lab object
Keys: obj, title, url, address, confidence, accredited,
accreditation_body, accreditation_logo, logo
"""
portal = self.context.portal_url.getPortalObject()
lab = self.context.bika_setup.laboratory
lab_address = lab.getPostalAddress() \
or lab.getBillingAddress() \
or lab.getPhysicalAddress()
if lab_address:
_keys = ['address', 'city', 'state', 'zip', 'country']
_list = [
"<div>%s</div>" % lab_address.get(v) for v in _keys
if lab_address.get(v)
]
lab_address = "".join(_list)
else:
lab_address = ''
return {
'obj': lab,
'title': to_utf8(lab.Title()),
'url': to_utf8(lab.getLabURL()),
'address': to_utf8(lab_address),
'confidence': lab.getConfidence(),
'accredited': lab.getLaboratoryAccredited(),
'accreditation_body': to_utf8(lab.getAccreditationBody()),
'accreditation_logo': lab.getAccreditationBodyLogo(),
'logo': "%s/logo_print.png" % portal.absolute_url()
}
def _client_data(self, ar):
data = {}
client = ar.aq_parent
if client:
data['obj'] = client
data['id'] = client.id
data['url'] = client.absolute_url()
data['name'] = to_utf8(client.getName())
data['phone'] = to_utf8(client.getPhone())
data['fax'] = to_utf8(client.getFax())
client_address = client.getPostalAddress()
if not client_address:
# Data from the first contact
contact = self.getAnalysisRequest().getContact()
if contact and contact.getBillingAddress():
client_address = contact.getBillingAddress()
elif contact and contact.getPhysicalAddress():
client_address = contact.getPhysicalAddress()
if client_address:
_keys = ['address', 'city', 'state', 'zip', 'country']
_list = [
"<div>%s</div>" % client_address.get(v) for v in _keys
if client_address.get(v)
]
client_address = "".join(_list)
else:
client_address = ''
data['address'] = to_utf8(client_address)
return data
def __call__(self, value, *args, **kwargs):
instance = kwargs['instance']
translate = getToolByName(instance, 'translation_service').translate
# remove spaces from formatted
IBAN = ''.join(c for c in value if c.isalnum())
IBAN = IBAN[4:] + IBAN[:4]
country = IBAN[-4:-2]
if country not in country_dic:
msg = _('Unknown IBAN country %s' % country)
return to_utf8(translate(msg))
length_c, name_c = country_dic[country]
if len(IBAN) != length_c:
diff = len(IBAN) - length_c
msg = _('Wrong IBAN length by %s: %s' % (('short by %i' % -diff) if diff < 0 else
('too long by %i' % diff), value))
return to_utf8(translate(msg))
# Validating procedure
elif int("".join(str(letter_dic[x]) for x in IBAN)) % 97 != 1:
msg = _('Incorrect IBAN number: %s' % value)
return to_utf8(translate(msg))
else:
# Accepted:
return True
def _createdby_data(self, ws):
""" Returns a dict that represents the user who created the ws
Keys: username, fullmame, email
"""
username = ws.getOwner().getUserName()
return {'username': username,
'fullname': to_utf8(self.user_fullname(username)),
'email': to_utf8(self.user_email(username))}
def _analyst_data(self, ws):
""" Returns a dict that represent the analyst assigned to the
worksheet.
Keys: username, fullname, email
"""
username = ws.getAnalyst();
return {'username': username,
'fullname': to_utf8(self.user_fullname(username)),
'email': to_utf8(self.user_email(username))}
def _contact_data(self, ar):
data = {}
contact = ar.getContact()
if contact:
data = {'obj': contact,
'fullname': to_utf8(contact.getFullname()),
'email': to_utf8(contact.getEmailAddress()),
'pubpref': contact.getPublicationPreference()}
return data
def _createdby_data(self, ws):
""" Returns a dict that represents the user who created the ws
Keys: username, fullmame, email
"""
username = ws.getOwner().getUserName()
return {
'username': username,
'fullname': to_utf8(self.user_fullname(username)),
'email': to_utf8(self.user_email(username))
}
def __call__(self, value, *args, **kwargs):
instance = kwargs['instance']
request = kwargs.get('REQUEST', {})
fieldname = kwargs['field'].getName()
translate = getToolByName(instance, 'translation_service').translate
mins = request.get('min', {})[0]
maxs = request.get('max', {})[0]
errors = request.get('error', {})[0]
# We run through the validator once per form submit, and check all values
# this value in request prevents running once per subfield value.
key = instance.id + fieldname
if instance.REQUEST.get(key, False):
return True
# Retrieve all AS uids
for uid in mins.keys():
# Foreach AS, check spec. input values
minv = mins.get(uid, '') == '' and '0' or mins[uid]
maxv = maxs.get(uid, '') == '' and '0' or maxs[uid]
err = errors.get(uid, '') == '' and '0' or errors[uid]
# Values must be numbers
try:
minv = float(minv)
except ValueError:
instance.REQUEST[key] = to_utf8(translate(_("Validation failed: Min values must be numeric")))
return instance.REQUEST[key]
try:
maxv = float(maxv)
except ValueError:
instance.REQUEST[key] = to_utf8(translate(_("Validation failed: Max values must be numeric")))
return instance.REQUEST[key]
try:
err = float(err)
except ValueError:
instance.REQUEST[key] = to_utf8(translate(_("Validation failed: Percentage error values must be numeric")))
return instance.REQUEST[key]
# Min value must be < max
if minv > maxv:
instance.REQUEST[key] = to_utf8(translate(_("Validation failed: Max values must be greater than Min values")))
return instance.REQUEST[key]
# Error percentage must be between 0 and 100
if err < 0 or err > 100:
instance.REQUEST[key] = to_utf8(translate(_("Validation failed: Error percentage must be between 0 and 100")))
return instance.REQUEST[key]
instance.REQUEST[key] = True
return True
def __call__(self, context):
translate = context.translate
types = (
('AnalysisRequest', translate(to_utf8(_('Analysis Request')))),
('Batch', translate(to_utf8(_('Batch')))),
('Sample', translate(to_utf8(_('Sample')))),
('ReferenceSample', translate(to_utf8(_('Reference Sample')))),
('Worksheet', translate(to_utf8(_('Worksheet'))))
)
items = [SimpleTerm(i[0], i[0], i[1]) for i in types]
return SimpleVocabulary(items)
def _analyst_data(self, ws):
""" Returns a dict that represent the analyst assigned to the
worksheet.
Keys: username, fullname, email
"""
username = ws.getAnalyst()
return {
'username': username,
'fullname': to_utf8(self.user_fullname(username)),
'email': to_utf8(self.user_email(username))
}
def _contact_data(self, ar):
data = {}
contact = ar.getContact()
if contact:
data = {
'obj': contact,
'fullname': to_utf8(contact.getFullname()),
'email': to_utf8(contact.getEmailAddress()),
'pubpref': contact.getPublicationPreference()
}
return data
def __call__(self, context):
translate = context.translate
types = (('AnalysisRequest',
translate(to_utf8(_('Analysis Request')))),
('Batch', translate(to_utf8(_('Batch')))),
('Sample', translate(to_utf8(_('Sample')))),
('ReferenceSample',
translate(to_utf8(_('Reference Sample')))),
('Worksheet', translate(to_utf8(_('Worksheet')))))
items = [SimpleTerm(i[0], i[0], i[1]) for i in types]
return SimpleVocabulary(items)
def __call__(self, value, *args, **kwargs):
instance = kwargs['instance']
# fieldname = kwargs['field'].getName()
# request = kwargs.get('REQUEST', {})
# form = request.get('form', {})
translate = getToolByName(instance, 'translation_service').translate
if re.findall(r"[^A-Za-z\w\d\-\_]", value):
return _("Validation failed: keyword contains invalid characters")
# check the value against all AnalysisService keywords
# this has to be done from catalog so we don't
# clash with ourself
bsc = getToolByName(instance, 'bika_setup_catalog')
services = bsc(portal_type='AnalysisService', getKeyword=value)
for service in services:
if service.UID != instance.UID():
msg = _(
"Validation failed: '${title}': This keyword "
"is already in use by service '${used_by}'",
mapping={
'title': safe_unicode(value),
'used_by': safe_unicode(service.Title)
})
return to_utf8(translate(msg))
calc = hasattr(instance, 'getCalculation') and \
instance.getCalculation() or None
our_calc_uid = calc and calc.UID() or ''
# check the value against all Calculation Interim Field ids
calcs = [c for c in bsc(portal_type='Calculation')]
for calc in calcs:
calc = calc.getObject()
interim_fields = calc.getInterimFields()
if not interim_fields:
continue
for field in interim_fields:
if field['keyword'] == value and our_calc_uid != calc.UID():
msg = _(
"Validation failed: '${title}': This keyword "
"is already in use by calculation '${used_by}'",
mapping={
'title': safe_unicode(value),
'used_by': safe_unicode(calc.Title())
})
return to_utf8(translate(msg))
return True
def __init__(self, context, request):
BikaListingView.__init__(self, context, request)
self.show_sort_column = False
self.show_select_row = False
self.show_select_column = False
self.show_workflow_action_buttons = False
self.pagesize = 999999
self.icon = self.portal_url + "/++resource++bika.lims.images/%s_big.png" % \
context.portal_type.lower()
self.title = to_utf8(self.context.Title()) + " " + t(_("Log"))
self.description = ""
self.columns = {
'Version': {'title': _('Version'), 'sortable': False},
'Date': {'title': _('Date'), 'sortable': False},
'User': {'title': _('User'), 'sortable': False},
'Action': {'title': _('Action'), 'sortable': False},
'Description': {'title': _('Description'), 'sortable': False},
}
self.review_states = [
{'id': 'default',
'title': 'All',
'contentFilter': {},
'columns': ['Version',
'Date',
'User',
'Action',
'Description']},
]
def __call__(self, value, *args, **kwargs):
instance = kwargs['instance']
# fieldname = kwargs['field'].getName()
# request = kwargs.get('REQUEST', {})
# form = request.get('form', {})
translate = getToolByName(instance, 'translation_service').translate
bsc = getToolByName(instance, 'bika_setup_catalog')
# uc = getToolByName(instance, 'uid_catalog')
failures = []
for category in value:
if not category:
continue
services = bsc(portal_type="AnalysisService",
getCategoryUID=category)
for service in services:
service = service.getObject()
calc = service.getCalculation()
deps = calc and calc.getDependentServices() or []
for dep in deps:
if dep.getCategoryUID() not in value:
title = dep.getCategoryTitle()
if title not in failures:
failures.append(title)
if failures:
msg = _("Validation failed: The selection requires the following "
"categories to be selected: ${categories}",
mapping={'categories': safe_unicode(','.join(failures))})
return to_utf8(translate(msg))
return True
def _managers_data(self, ar):
managers = {'ids': [], 'dict': {}}
departments = {}
ar_mngrs = ar.getResponsible()
for id in ar_mngrs['ids']:
new_depts = ar_mngrs['dict'][id]['departments'].split(',')
if id in managers['ids']:
for dept in new_depts:
if dept not in departments[id]:
departments[id].append(dept)
else:
departments[id] = new_depts
managers['ids'].append(id)
managers['dict'][id] = ar_mngrs['dict'][id]
mngrs = departments.keys()
for mngr in mngrs:
final_depts = ''
for dept in departments[mngr]:
if final_depts:
final_depts += ', '
final_depts += to_utf8(dept)
managers['dict'][mngr]['departments'] = final_depts
return managers
def _managers_data(self, ar):
managers = {'ids': [], 'dict': {}}
departments = {}
ar_mngrs = ar.getResponsible()
for id in ar_mngrs['ids']:
new_depts = ar_mngrs['dict'][id]['departments'].split(',')
if id in managers['ids']:
for dept in new_depts:
if dept not in departments[id]:
departments[id].append(dept)
else:
departments[id] = new_depts
managers['ids'].append(id)
managers['dict'][id] = ar_mngrs['dict'][id]
mngrs = departments.keys()
for mngr in mngrs:
final_depts = ''
for dept in departments[mngr]:
if final_depts:
final_depts += ', '
final_depts += to_utf8(dept)
managers['dict'][mngr]['departments'] = final_depts
return managers
def localise_images(self, htmlreport):
"""WeasyPrint will attempt to retrieve attachments directly from the URL
referenced in the HTML report, which may refer back to a single-threaded
(and currently occupied) zeoclient, hanging it. All "attachments"
using urls ending with at_download/AttachmentFile must be converted
to local files.
Returns a list of files which were created, and a modified copy
of htmlreport.
"""
cleanup = []
_htmltext = to_utf8(htmlreport)
# first regular image tags
for match in re.finditer("""http.*at_download\/AttachmentFile""", _htmltext, re.I):
url = match.group()
att_path = url.replace(self.portal_url+"/", "")
attachment = self.portal.unrestrictedTraverse(att_path)
af = attachment.getAttachmentFile()
filename = af.filename
extension = "."+filename.split(".")[-1]
outfile, outfilename = tempfile.mkstemp(suffix=extension)
outfile = open(outfilename, 'wb')
outfile.write(str(af.data))
outfile.close()
_htmltext.replace(url, outfilename)
cleanup.append(outfilename)
return cleanup, _htmltext
def localise_images(self, htmlreport):
"""WeasyPrint will attempt to retrieve attachments directly from the URL
referenced in the HTML report, which may refer back to a single-threaded
(and currently occupied) zeoclient, hanging it. All "attachments"
using urls ending with at_download/AttachmentFile must be converted
to local files.
Returns a list of files which were created, and a modified copy
of htmlreport.
"""
cleanup = []
_htmltext = to_utf8(htmlreport)
# first regular image tags
for match in re.finditer("""http.*at_download\/AttachmentFile""",
_htmltext, re.I):
url = match.group()
att_path = url.replace(self.portal_url + "/", "")
attachment = self.portal.unrestrictedTraverse(att_path)
af = attachment.getAttachmentFile()
filename = af.filename
extension = "." + filename.split(".")[-1]
outfile, outfilename = tempfile.mkstemp(suffix=extension)
outfile = open(outfilename, 'wb')
outfile.write(str(af.data))
outfile.close()
_htmltext.replace(url, outfilename)
cleanup.append(outfilename)
return cleanup, _htmltext
def __call__(self, value, *args, **kwargs):
instance = kwargs['instance']
fieldname = kwargs['field'].getName()
# request = kwargs.get('REQUEST', {})
# form = request.get('form', {})
translate = getToolByName(instance, 'translation_service').translate
if value == instance.get(fieldname):
return True
for item in aq_parent(instance).objectValues():
if hasattr(item, 'UID') and item.UID() != instance.UID() and \
fieldname in item.Schema() and \
str(item.Schema()[fieldname].get(item)) == str(value): # We have to compare them as strings because
# even if a number (as an id) is saved inside
# a string widget and string field, it will be
# returned as an int. I don't know if it is
# caused because is called with
# <item.Schema()[fieldname].get(item)>,
# but it happens...
msg = _("Validation failed: '${value}' is not unique",
mapping={'value': safe_unicode(value)})
return to_utf8(translate(msg))
return True
def __call__(self, value, *args, **kwargs):
instance = kwargs['instance']
fieldname = kwargs['field'].getName()
# request = kwargs.get('REQUEST', {})
# form = request.get('form', {})
translate = getToolByName(instance, 'translation_service').translate
if value == instance.get(fieldname):
return True
for item in aq_parent(instance).objectValues():
if hasattr(item, 'UID') and item.UID() != instance.UID() and \
fieldname in item.Schema() and \
str(item.Schema()[fieldname].get(item)) == str(value): # We have to compare them as strings because
# even if a number (as an id) is saved inside
# a string widget and string field, it will be
# returned as an int. I don't know if it is
# caused because is called with
# <item.Schema()[fieldname].get(item)>,
# but it happens...
msg = _("Validation failed: '${value}' is not unique",
mapping={'value': safe_unicode(value)})
return to_utf8(translate(msg))
return True
def __call__(self, value, *args, **kwargs):
instance = kwargs['instance']
# fieldname = kwargs['field'].getName()
# request = kwargs.get('REQUEST', {})
# form = request.get('form', {})
translate = getToolByName(instance, 'translation_service').translate
bsc = getToolByName(instance, 'bika_setup_catalog')
# uc = getToolByName(instance, 'uid_catalog')
failures = []
for category in value:
if not category:
continue
services = bsc(portal_type="AnalysisService",
getCategoryUID=category)
for service in services:
service = service.getObject()
calc = service.getCalculation()
deps = calc and calc.getDependentServices() or []
for dep in deps:
if dep.getCategoryUID() not in value:
title = dep.getCategoryTitle()
if title not in failures:
failures.append(title)
if failures:
msg = _(
"Validation failed: The selection requires the following "
"categories to be selected: ${categories}",
mapping={'categories': safe_unicode(','.join(failures))})
return to_utf8(translate(msg))
return True
def _batch_data(self, ar):
data = {}
batch = ar.getBatch()
if batch:
data = {'obj': batch,
'id': batch.id,
'url': batch.absolute_url(),
'title': to_utf8(batch.Title()),
'date': batch.getBatchDate(),
'client_batchid': to_utf8(batch.getClientBatchID()),
'remarks': to_utf8(batch.getRemarks())}
uids = batch.Schema()['BatchLabels'].getAccessor(batch)()
uc = getToolByName(self.context, 'uid_catalog')
data['labels'] = [to_utf8(p.getObject().Title()) for p in uc(UID=uids)]
return data
def _reporter_data(self, ar):
data = {}
member = self.context.portal_membership.getAuthenticatedMember()
if member:
username = member.getUserName()
data['username'] = username
data['fullname'] = to_utf8(self.user_fullname(username))
data['email'] = to_utf8(self.user_email(username))
c = [x for x in self.bika_setup_catalog(portal_type='LabContact')
if x.getObject().getUsername() == username]
if c:
sf = c[0].getObject().getSignature()
if sf:
data['signature'] = sf.absolute_url() + "/Signature"
return data
def get_recipients(self, ar):
""" Returns a list with the recipients and all its publication prefs
"""
recips = []
# Contact and CC's
contact = ar.getContact()
if contact:
recips.append({'title': to_utf8(contact.Title()),
'email': contact.getEmailAddress(),
'pubpref': contact.getPublicationPreference()})
for cc in ar.getCCContact():
recips.append({'title': to_utf8(cc.Title()),
'email': cc.getEmailAddress(),
'pubpref': contact.getPublicationPreference()})
return recips
def _sampler_data(self, sample=None):
data = {}
if not sample or not sample.getSampler():
return data
sampler = sample.getSampler()
mtool = getToolByName(self, 'portal_membership')
member = mtool.getMemberById(sampler)
if member:
mfullname = member.getProperty('fullname')
memail = member.getProperty('email')
mhomepage = member.getProperty('home_page')
pc = getToolByName(self, 'portal_catalog')
c = pc(portal_type='Contact', getUsername=member.id)
c = c[0].getObject() if c else None
cfullname = c.getFullname() if c else None
cemail = c.getEmailAddress() if c else None
data = {'id': member.id,
'fullname': to_utf8(cfullname) if cfullname else to_utf8(mfullname),
'email': cemail if cemail else memail,
'business_phone': c.getBusinessPhone() if c else '',
'business_fax': c.getBusinessFax() if c else '',
'home_phone': c.getHomePhone() if c else '',
'mobile_phone': c.getMobilePhone() if c else '',
'job_title': to_utf8(c.getJobTitle()) if c else '',
'department': to_utf8(c.getDepartment()) if c else '',
'physical_address': to_utf8(c.getPhysicalAddress()) if c else '',
'postal_address': to_utf8(c.getPostalAddress()) if c else '',
'home_page': to_utf8(mhomepage)}
return data
def __call__(self, value, *args, **kwargs):
if not value:
return True
instance = kwargs['instance']
# fieldname = kwargs['field'].getName()
request = kwargs.get('REQUEST', {})
form = request.form
interim_fields = form.get('InterimFields')
translate = getToolByName(instance, 'translation_service').translate
bsc = getToolByName(instance, 'bika_setup_catalog')
interim_keywords = interim_fields and \
[f['keyword'] for f in interim_fields] or []
keywords = re.compile(r"\[([^\.^\]]+)\]").findall(value)
for keyword in keywords:
# Check if the service keyword exists and is active.
dep_service = bsc(getKeyword=keyword, inactive_state="active")
if not dep_service and \
not keyword in interim_keywords:
msg = _("Validation failed: Keyword '${keyword}' is invalid",
mapping={'keyword': safe_unicode(keyword)})
return to_utf8(translate(msg))
# Wildcards
# LIMS-1769 Allow to use LDL and UDL in calculations
# https://jira.bikalabs.com/browse/LIMS-1769
allowedwds = ['LDL', 'UDL', 'BELOWLDL', 'ABOVEUDL']
keysandwildcards = re.compile(r"\[([^\]]+)\]").findall(value)
keysandwildcards = [k for k in keysandwildcards if '.' in k]
keysandwildcards = [k.split('.', 1) for k in keysandwildcards]
errwilds = [k[1] for k in keysandwildcards if k[0] not in keywords]
if len(errwilds) > 0:
msg = _("Wildcards for interims are not allowed: ${wildcards}",
mapping={'wildcards': safe_unicode(', '.join(errwilds))})
return to_utf8(translate(msg))
wildcards = [k[1] for k in keysandwildcards if k[0] in keywords]
wildcards = [wd for wd in wildcards if wd not in allowedwds]
if len(wildcards) > 0:
msg = _("Invalid wildcards found: ${wildcards}",
mapping={'wildcards': safe_unicode(', '.join(wildcards))})
return to_utf8(translate(msg))
return True
def __call__(self, value, *args, **kwargs):
if not value:
return True
instance = kwargs['instance']
# fieldname = kwargs['field'].getName()
request = kwargs.get('REQUEST', {})
form = request.form
interim_fields = form.get('InterimFields')
translate = getToolByName(instance, 'translation_service').translate
bsc = getToolByName(instance, 'bika_setup_catalog')
interim_keywords = interim_fields and \
[f['keyword'] for f in interim_fields] or []
keywords = re.compile(r"\[([^\.^\]]+)\]").findall(value)
for keyword in keywords:
# Check if the service keyword exists and is active.
dep_service = bsc(getKeyword=keyword, inactive_state="active")
if not dep_service and \
not keyword in interim_keywords:
msg = _("Validation failed: Keyword '${keyword}' is invalid",
mapping={'keyword': safe_unicode(keyword)})
return to_utf8(translate(msg))
# Wildcards
# LIMS-1769 Allow to use LDL and UDL in calculations
# https://jira.bikalabs.com/browse/LIMS-1769
allowedwds = ['LDL', 'UDL', 'BELOWLDL', 'ABOVEUDL']
keysandwildcards = re.compile(r"\[([^\]]+)\]").findall(value)
keysandwildcards = [k for k in keysandwildcards if '.' in k]
keysandwildcards = [k.split('.',1) for k in keysandwildcards]
errwilds = [k[1] for k in keysandwildcards if k[0] not in keywords]
if len(errwilds) > 0:
msg = _("Wildcards for interims are not allowed: ${wildcards}",
mapping={'wildcards': safe_unicode(', '.join(errwilds))})
return to_utf8(translate(msg))
wildcards = [k[1] for k in keysandwildcards if k[0] in keywords]
wildcards = [wd for wd in wildcards if wd not in allowedwds]
if len(wildcards) > 0:
msg = _("Invalid wildcards found: ${wildcards}",
mapping={'wildcards': safe_unicode(', '.join(wildcards))})
return to_utf8(translate(msg))
return True
def _sampler_data(self, sample=None):
data = {}
if not sample or not sample.getSampler():
return data
sampler = sample.getSampler()
mtool = getToolByName(self, 'portal_membership')
member = mtool.getMemberById(sampler)
if member:
mfullname = member.getProperty('fullname')
memail = member.getProperty('email')
mhomepage = member.getProperty('home_page')
pc = getToolByName(self, 'portal_catalog')
c = pc(portal_type='Contact', getUsername=member.id)
c = c[0].getObject() if c else None
cfullname = c.getFullname() if c else None
cemail = c.getEmailAddress() if c else None
data = {
'id': member.id,
'fullname':
to_utf8(cfullname) if cfullname else to_utf8(mfullname),
'email': cemail if cemail else memail,
'business_phone': c.getBusinessPhone() if c else '',
'business_fax': c.getBusinessFax() if c else '',
'home_phone': c.getHomePhone() if c else '',
'mobile_phone': c.getMobilePhone() if c else '',
'job_title': to_utf8(c.getJobTitle()) if c else '',
'department': to_utf8(c.getDepartment()) if c else '',
'physical_address':
to_utf8(c.getPhysicalAddress()) if c else '',
'postal_address': to_utf8(c.getPostalAddress()) if c else '',
'home_page': to_utf8(mhomepage)
}
return data
def __call__(self, value, *args, **kwargs):
instance = kwargs['instance']
# fieldname = kwargs['field'].getName()
# request = kwargs.get('REQUEST', {})
# form = request.get('form', {})
translate = getToolByName(instance, 'translation_service').translate
try:
value = float(value)
except:
msg = _("Validation failed: percent values must be numbers")
return to_utf8(translate(msg))
if value < 0 or value > 100:
msg = _("Validation failed: percent values must be between 0 and 100")
return to_utf8(translate(msg))
return True
def __call__(self, value, *args, **kwargs):
instance = kwargs['instance']
# fieldname = kwargs['field'].getName()
# request = kwargs.get('REQUEST', {})
# form = request.get('form', {})
translate = getToolByName(instance, 'translation_service').translate
if re.findall(r"[^A-Za-z\w\d\-\_]", value):
return _("Validation failed: keyword contains invalid characters")
# check the value against all AnalysisService keywords
# this has to be done from catalog so we don't
# clash with ourself
bsc = getToolByName(instance, 'bika_setup_catalog')
services = bsc(portal_type='AnalysisService', getKeyword=value)
for service in services:
if service.UID != instance.UID():
msg = _("Validation failed: '${title}': This keyword "
"is already in use by service '${used_by}'",
mapping={'title': safe_unicode(value),
'used_by': safe_unicode(service.Title)})
return to_utf8(translate(msg))
calc = hasattr(instance, 'getCalculation') and \
instance.getCalculation() or None
our_calc_uid = calc and calc.UID() or ''
# check the value against all Calculation Interim Field ids
calcs = [c for c in bsc(portal_type='Calculation')]
for calc in calcs:
calc = calc.getObject()
interim_fields = calc.getInterimFields()
if not interim_fields:
continue
for field in interim_fields:
if field['keyword'] == value and our_calc_uid != calc.UID():
msg = _("Validation failed: '${title}': This keyword "
"is already in use by calculation '${used_by}'",
mapping={'title': safe_unicode(value),
'used_by': safe_unicode(calc.Title())})
return to_utf8(translate(msg))
return True
def _reporter_data(self, ar):
data = {}
member = self.context.portal_membership.getAuthenticatedMember()
if member:
username = member.getUserName()
data['username'] = username
data['fullname'] = to_utf8(self.user_fullname(username))
data['email'] = to_utf8(self.user_email(username))
c = [
x for x in self.bika_setup_catalog(portal_type='LabContact')
if x.getObject().getUsername() == username
]
if c:
sf = c[0].getObject().getSignature()
if sf:
data['signature'] = sf.absolute_url() + "/Signature"
return data
def __call__(self, value, *args, **kwargs):
instance = kwargs['instance']
# fieldname = kwargs['field'].getName()
# request = kwargs.get('REQUEST', {})
# form = request.get('form', {})
translate = getToolByName(instance, 'translation_service').translate
try:
value = float(value)
except:
msg = _("Validation failed: percent values must be numbers")
return to_utf8(translate(msg))
if value < 0 or value > 100:
msg = _(
"Validation failed: percent values must be between 0 and 100")
return to_utf8(translate(msg))
return True
def _printedby_data(self, ws):
""" Returns a dict that represents the user who prints the ws
Keys: username, fullname, email
"""
data = {}
member = self.context.portal_membership.getAuthenticatedMember()
if member:
username = member.getUserName()
data['username'] = username
data['fullname'] = to_utf8(self.user_fullname(username))
data['email'] = to_utf8(self.user_email(username))
c = [x for x in self.bika_setup_catalog(portal_type='LabContact')
if x.getObject().getUsername() == username]
if c:
sf = c[0].getObject().getSignature()
if sf:
data['signature'] = sf.absolute_url() + "/Signature"
return data
def _client_data(self, client):
""" Returns a dict that represents the client specified
Keys: obj, id, url, name
"""
data = {}
if client:
data['obj'] = client
data['id'] = client.id
data['url'] = client.absolute_url()
data['name'] = to_utf8(client.getName())
return data
def _client_data(self, client):
""" Returns a dict that represents the client specified
Keys: obj, id, url, name
"""
data = {}
if client:
data['obj'] = client
data['id'] = client.id
data['url'] = client.absolute_url()
data['name'] = to_utf8(client.getName())
return data
def _batch_data(self, ar):
data = {}
batch = ar.getBatch()
if batch:
data = {
'obj': batch,
'id': batch.id,
'url': batch.absolute_url(),
'title': to_utf8(batch.Title()),
'date': batch.getBatchDate(),
'client_batchid': to_utf8(batch.getClientBatchID()),
'remarks': to_utf8(batch.getRemarks())
}
uids = batch.Schema()['BatchLabels'].getAccessor(batch)()
uc = getToolByName(self.context, 'uid_catalog')
data['labels'] = [
to_utf8(p.getObject().Title()) for p in uc(UID=uids)
]
return data
def get_recipients(self, ar):
""" Returns a list with the recipients and all its publication prefs
"""
recips = []
# Contact and CC's
contact = ar.getContact()
if contact:
recips.append({
'title': to_utf8(contact.Title()),
'email': contact.getEmailAddress(),
'pubpref': contact.getPublicationPreference()
})
for cc in ar.getCCContact():
recips.append({
'title': to_utf8(cc.Title()),
'email': cc.getEmailAddress(),
'pubpref': contact.getPublicationPreference()
})
return recips
def __call__(self, value, *args, **kwargs):
instance = kwargs['instance']
fieldname = kwargs['field'].getName()
request = kwargs.get('REQUEST', {})
form = request.form
form_value = form.get(fieldname)
translate = getToolByName(instance, 'translation_service').translate
# bsc = getToolByName(instance, 'bika_setup_catalog')
# ResultValue must always be a number
for field in form_value:
try:
float(field['ResultValue'])
except:
return to_utf8(translate(_("Validation failed: "
"Result Values must be numbers")))
if 'ResultText' not in field:
return to_utf8(translate(_("Validation failed: Result Text cannot be blank")))
return True
def __call__(self, value, *args, **kwargs):
instance = kwargs['instance']
# fieldname = kwargs['field'].getName()
request = kwargs.get('REQUEST', {})
fieldname = kwargs['field'].getName()
translate = getToolByName(instance, 'translation_service').translate
ress = request.get('result', {})[0]
mins = request.get('min', {})[0]
maxs = request.get('max', {})[0]
errs = request.get('error', {})[0]
# Retrieve all AS uids
uids = ress.keys()
for uid in uids:
# Foreach AS, check spec. input values
res = ress[uid] if ress[uid] else '0'
min = mins[uid] if mins[uid] else '0'
max = maxs[uid] if maxs[uid] else '0'
err = errs[uid] if errs[uid] else '0'
# Values must be numbers
try:
res = float(res)
except ValueError:
return to_utf8(translate(_("Validation failed: Expected values must be numeric")))
try:
min = float(min)
except ValueError:
return to_utf8(translate(_("Validation failed: Min values must be numeric")))
try:
max = float(max)
except ValueError:
return to_utf8(translate(_("Validation failed: Max values must be numeric")))
try:
err = float(err)
except ValueError:
return to_utf8(translate(_("Validation failed: Percentage error values must be numeric")))
# Min value must be < max
if min > max:
return to_utf8(translate(_("Validation failed: Max values must be greater than Min values")))
# Expected result must be between min and max
if res < min or res > max:
return to_utf8(translate(_("Validation failed: Expected values must be between Min and Max values")))
# Error percentage must be between 0 and 100
if err < 0 or err > 100:
return to_utf8(translate(_("Validation failed: Percentage error values must be between 0 and 100")))
return True
def _printedby_data(self, ws):
""" Returns a dict that represents the user who prints the ws
Keys: username, fullname, email
"""
data = {}
member = self.context.portal_membership.getAuthenticatedMember()
if member:
username = member.getUserName()
data['username'] = username
data['fullname'] = to_utf8(self.user_fullname(username))
data['email'] = to_utf8(self.user_email(username))
c = [
x for x in self.bika_setup_catalog(portal_type='LabContact')
if x.getObject().getUsername() == username
]
if c:
sf = c[0].getObject().getSignature()
if sf:
data['signature'] = sf.absolute_url() + "/Signature"
return data
def __call__(self, context):
site = getSite()
request = aq_get(site, 'REQUEST', None)
items = []
for client in site.clients.objectValues('Client'):
objects = list(client.objectValues('Contact'))
objects.sort(lambda x, y: cmp(x.getFullname().lower(),
y.getFullname().lower()))
xitems = [(to_utf8(item.getFullname()), item.getFullname())
for item in objects]
xitems = [SimpleTerm(i[1], i[1], i[0]) for i in xitems]
items += xitems
return SimpleVocabulary(items)
def __call__(self, context):
site = getSite()
request = aq_get(site, 'REQUEST', None)
items = []
for client in site.clients.objectValues('Client'):
objects = list(client.objectValues('Contact'))
objects.sort(lambda x, y: cmp(x.getFullname().lower(),
y.getFullname().lower()))
xitems = [(to_utf8(item.getFullname()), item.getFullname())
for item in objects]
xitems = [SimpleTerm(i[1], i[1], i[0]) for i in xitems]
items += xitems
return SimpleVocabulary(items)
def __call__(self, value, *args, **kwargs):
instance = kwargs['instance']
request = kwargs.get('REQUEST', {})
fieldname = kwargs['field'].getName()
translate = getToolByName(instance, 'translation_service').translate
value = request[fieldname]
for v in value.values():
try:
int(v)
except:
return to_utf8(translate(_("Validation failed: Values must be numbers")))
return True
def _specs_data(self, ar):
data = {}
specs = ar.getPublicationSpecification()
if not specs:
specs = ar.getSpecification()
if specs:
data['obj'] = specs
data['id'] = specs.id
data['url'] = specs.absolute_url()
data['title'] = to_utf8(specs.Title())
data['resultsrange'] = specs.getResultsRangeDict()
return data
def _specs_data(self, ar):
data = {}
specs = ar.getPublicationSpecification()
if not specs:
specs = ar.getSpecification()
if specs:
data['obj'] = specs
data['id'] = specs.id
data['url'] = specs.absolute_url()
data['title'] = to_utf8(specs.Title())
data['resultsrange'] = specs.getResultsRangeDict()
return data
def __call__(self, subf_value, *args, **kwargs):
instance = kwargs['instance']
request = kwargs.get('REQUEST', {})
fieldname = kwargs['field'].getName()
translate = getToolByName(instance, 'translation_service').translate
# We run through the validator once per form submit, and check all values
# this value in request prevents running once per subfield value.
key = instance.id + fieldname
if instance.REQUEST.get(key, False):
return True
for i, value in enumerate(request[fieldname]):
# Values must be numbers
try:
minv = float(value['intercept_min'])
except ValueError:
instance.REQUEST[key] = to_utf8(translate(_("Validation failed: Min values must be numeric")))
return instance.REQUEST[key]
try:
maxv = float(value['intercept_max'])
except ValueError:
instance.REQUEST[key] = to_utf8(translate(_("Validation failed: Max values must be numeric")))
return instance.REQUEST[key]
# values may be percentages; the rest of the numeric validation must
# still pass once the '%' is stripped off.
err = value['errorvalue']
perc = False
if err.endswith('%'):
perc = True
err = err[:-1]
try:
err = float(err)
except ValueError:
instance.REQUEST[key] = to_utf8(translate(_("Validation failed: Error values must be numeric")))
return instance.REQUEST[key]
if perc and (err < 0 or err > 100):
# Error percentage must be between 0 and 100
instance.REQUEST[key] = to_utf8(translate(_("Validation failed: Error percentage must be between 0 and 100")))
return instance.REQUEST[key]
# Min value must be < max
if minv > maxv:
instance.REQUEST[key] = to_utf8(translate(_("Validation failed: Max values must be greater than Min values")))
return instance.REQUEST[key]
# Error values must be >-1
if err < 0:
instance.REQUEST[key] = to_utf8(translate(_("Validation failed: Error value must be 0 or greater")))
return instance.REQUEST[key]
instance.REQUEST[key] = True
return True
def __call__(self, value, *args, **kwargs):
instance = kwargs['instance']
request = kwargs.get('REQUEST', {})
fieldname = kwargs['field'].getName()
translate = getToolByName(instance, 'translation_service').translate
value = request[fieldname]
for v in value.values():
try:
int(v)
except:
return to_utf8(
translate(_("Validation failed: Values must be numbers")))
return True
def __init__(self, context, request):
BikaListingView.__init__(self, context, request)
self.show_sort_column = False
self.show_select_row = False
self.show_select_column = False
self.show_workflow_action_buttons = False
self.pagesize = 999999
self.icon = self.portal_url + "/++resource++bika.lims.images/%s_big.png" % \
context.portal_type.lower()
self.title = to_utf8(self.context.Title()) + " " + t(_("Log"))
self.description = ""
self.columns = {
'Version': {
'title': _('Version'),
'sortable': False
},
'Date': {
'title': _('Date'),
'sortable': False
},
'User': {
'title': _('User'),
'sortable': False
},
'Action': {
'title': _('Action'),
'sortable': False
},
'Description': {
'title': _('Description'),
'sortable': False
},
}
self.review_states = [
{
'id': 'default',
'title': 'All',
'contentFilter': {},
'columns':
['Version', 'Date', 'User', 'Action', 'Description']
},
]
def __call__(self, value, *args, **kwargs):
regex = r"[^A-Za-z\w\d\-\_]"
instance = kwargs['instance']
# fieldname = kwargs['field'].getName()
# request = kwargs.get('REQUEST', {})
# form = request.get('form', {})
translate = getToolByName(instance, 'translation_service').translate
# check the value against all AnalysisService keywords
if re.findall(regex, value):
msg = _("Validation failed: keyword contains invalid "
"characters")
return to_utf8(translate(msg))
return True
def __call__(self, value, *args, **kwargs):
regex = r"[^A-Za-z\w\d\-\_]"
instance = kwargs['instance']
# fieldname = kwargs['field'].getName()
# request = kwargs.get('REQUEST', {})
# form = request.get('form', {})
translate = getToolByName(instance, 'translation_service').translate
# check the value against all AnalysisService keywords
if re.findall(regex, value):
msg = _("Validation failed: keyword contains invalid "
"characters")
return to_utf8(translate(msg))
return True
def __call__(self, value, *args, **kwargs):
"""
Check the NIB number
value:: string with NIB.
"""
instance = kwargs['instance']
translate = getToolByName(instance, 'translation_service').translate
LEN_NIB = 21
table = ( 73, 17, 89, 38, 62, 45, 53, 15, 50,
5, 49, 34, 81, 76, 27, 90, 9, 30, 3 )
# convert to entire numbers list
nib = _toIntList(value)
# checking the length of the number
if len(nib) != LEN_NIB:
msg = _('Incorrect NIB number: %s' % value)
return to_utf8(translate(msg))
# last numbers algorithm validator
return nib[-2] * 10 + nib[-1] == 98 - _sumLists(table, nib[:-2]) % 97
def __call__(self, value, *args, **kwargs):
"""
Check the NIB number
value:: string with NIB.
"""
instance = kwargs['instance']
translate = getToolByName(instance, 'translation_service').translate
LEN_NIB = 21
table = (73, 17, 89, 38, 62, 45, 53, 15, 50, 5, 49, 34, 81, 76, 27, 90,
9, 30, 3)
# convert to entire numbers list
nib = _toIntList(value)
# checking the length of the number
if len(nib) != LEN_NIB:
msg = _('Incorrect NIB number: %s' % value)
return to_utf8(translate(msg))
# last numbers algorithm validator
return nib[-2] * 10 + nib[-1] == 98 - _sumLists(table, nib[:-2]) % 97
def artemplates(self):
""" Return applicable client and Lab ARTemplate records
"""
res = []
templates = []
client = self.context.portal_type == 'AnalysisRequest' \
and self.context.aq_parent or self.context
for template in client.objectValues("ARTemplate"):
if isActive(template):
templates.append((template.Title(), template))
templates.sort(lambda x, y: cmp(x[0], y[0]))
res += templates
templates = []
for template in self.context.bika_setup.bika_artemplates.objectValues(
"ARTemplate"):
if isActive(template):
lab = t(_('Lab'))
title = to_utf8(template.Title())
templates.append(("%s: %s" % (lab, title), template))
templates.sort(lambda x, y: cmp(x[0], y[0]))
res += templates
return res
def analysisprofiles(self):
""" Return applicable client and Lab AnalysisProfile records
"""
res = []
profiles = []
client = self.context.portal_type == 'AnalysisRequest' \
and self.context.aq_parent or self.context
for profile in client.objectValues("AnalysisProfile"):
if isActive(profile):
profiles.append((profile.Title(), profile))
profiles.sort(lambda x, y: cmp(x[0], y[0]))
res += profiles
profiles = []
for profile in self.context.bika_setup.bika_analysisprofiles.objectValues(
"AnalysisProfile"):
if isActive(profile):
lab = t(_('Lab'))
title = to_utf8(profile.Title())
profiles.append(("%s: %s" % (lab, title), profile))
profiles.sort(lambda x, y: cmp(x[0], y[0]))
res += profiles
return res
def __call__(self, value, *args, **kwargs):
# If not prepreserved, no validation required.
if not value:
return True
instance = kwargs['instance']
# fieldname = kwargs['field'].getName()
request = kwargs.get('REQUEST', {})
form = request.form
preservation = form.get('Preservation')
if type(preservation) in (list, tuple):
preservation = preservation[0]
if preservation:
return True
translate = getToolByName(instance, 'translation_service').translate
# bsc = getToolByName(instance, 'bika_setup_catalog')
if not preservation:
msg = _("Validation failed: PrePreserved containers "
"must have a preservation selected.")
return to_utf8(translate(msg))