def read_embedding(file_path):
vector_dic = {}
with open(file_path, 'r') as f:
for line_num, eachline in enumerate(f):
if line_num == 1:
continue
for line in f:
node = str(line.split(' ')[0])
vector = []
list_1 = line.split(' ')[1:]
for i in list_1:
vector.append(float(i))
vector_dic[node] = vector
return vector_dic
def parse_columns_from_line( self, line ):
"""
Returns a list of the desired, parsed columns.
:param line: the line to parse
:type line: str
"""
#TODO: too much going on in this loop - the above should all be precomputed AMAP...
all_columns = line.split( self.deliminator )
# if no indeces were passed to init, return all columns
selected_indeces = self.selected_column_indeces or list( xrange( len( all_columns ) ) )
parsed_columns = []
for parser_index, column_index in enumerate( selected_indeces ):
parsed_columns.append( self.parse_column_at_index( all_columns, parser_index, column_index ) )
return parsed_columns
def ReadGcodeFile(filepath):
f=open(filepath,"r")
for l in f:
line=l.split()
if 'G1' in line:
G1(line)
continue
if 'G0' in line:
G0(line)
continue
if 'G2' in line:
G2(line)
continue
if 'G3' in line:
G3(line)
continue
def parse_columns_from_line(self, line):
"""
Returns a list of the desired, parsed columns.
:param line: the line to parse
:type line: str
"""
#TODO: too much going on in this loop - the above should all be precomputed AMAP...
all_columns = line.split(self.deliminator)
# if no indeces were passed to init, return all columns
selected_indeces = self.selected_column_indeces or list(
xrange(len(all_columns)))
parsed_columns = []
for parser_index, column_index in enumerate(selected_indeces):
parsed_columns.append(
self.parse_column_at_index(all_columns, parser_index,
column_index))
return parsed_columns
def Convert2dtoangle(filepath, filepath2):
f = open(filepath, "r")
fr = open(filepath2, "w")
for l in f:
line = l.split()
x = 0
y = 0
for token in line:
if 'X' in token:
x = float(token[1:])
if 'Y' in token:
y = float(token[1:])
if 'C' in token: #for tempray 2d code
z = float(token[1:])
fr.write("C" + str(z) + "\n")
#print "x=",x,"y=",y
if (x == 0 and y == 0):
continue
distancexy = math.hypot(x, y)
#print "distannce=",distancexy
if x == 0:
A1 = 90
distancexy = y
else:
A1 = getangle(x, distancexy, y) #below rotation angle
if y == 0:
distancexy = x
A2 = getangle(distancexy, firsthand, secondhand)
A = A1 + A2
B = getangle(firsthand, secondhand, distancexy)
#print "AB",A,B
fr.write("A" + str(A) + " B" + str(B) + " #x=" + str(x) + " y=" +
str(y) + "\n")
print("A" + str(A) + " B" + str(B) + "\n")
def load(self, path):
with open(path, "r") as map:
for line in map:
info = line.split(" ")
self._parse(info)
coords.append(l)
if (l.find("Coordinates of moved atoms (au):") != -1):
start = True
fp.close()
atomslist = []
for l in coords:
p = re.compile(r'\s+')
line = p.sub(' ', l)
line = line.lstrip()
line = line.rstrip()
plist = line.split(" ")
if len(plist) == 4:
atomslist.append((int(plist[0])-1, \
float(plist[1])*DELTA, float(plist[2])*DELTA, \
float(plist[3])*DELTA))
for a in atomslist:
idx = a[0]
xlist[idx] = a[1]
ylist[idx] = a[2]
zlist[idx] = a[3]
xyznanop.write_ncxyz("out.xyz", xlist, ylist, zlist, atoms)
util.file_to_sphere_diffr_list(filename, spheres)
totr = 0.0
for s in spheres:
totr += s.get_radius()
meanr = totr / float(len(spheres))
meand = 2.0 * meanr
#print "xmax: ", xmax, "xmin: ",xmin, "ymax: ", ymax, \
# "ymin: ", ymin, "zmx: ", zmax, "zmin: ", zmin
file = open("points.txt", "r")
for line in file:
sx, sy, sz = line.split(" ")
x = float(sx)
y = float(sy)
z = float(sz)
circles = util_for_tr.get_circle_in_plane(spheres, z)
if not util_for_tr.is_inside_circles(x, y, circles):
poly_data_points_initial = util_for_tr.get_circle_points_list(
x, y, circles)
poly_data_points = []
for p in poly_data_points_initial:
d = util_for_tr.point_distance(p, [x, y])
def load(self, path):
with open(path, "r") as map:
for line in map:
info = line.split(" ")
self._parse(info)
