def main_train():
trX, teX, trY, teY = mnist(onehot=True)
X = T.fmatrix()
Y = T.fmatrix()
w_h = init_weights((784, 625))
w_h2 = init_weights((625, 625))
w_o = init_weights((625, 10))
params = [w_h, w_h2, w_o]
noise_h, noise_h2, noise_py_x = model(X, params, 0.2, 0.5)
h, h2, py_x = model(X, params, 0., 0.)
y_x = T.argmax(py_x, axis=1)
cost = T.mean(T.nnet.categorical_crossentropy(noise_py_x, Y))
updates = RMSprop(cost, params, lr=0.001)
train = theano.function(inputs=[X, Y], outputs=cost, updates=updates, allow_input_downcast=True)
predict = theano.function(inputs=[X], outputs=y_x, allow_input_downcast=True)
for i in range(100):
for start, end in zip(range(0, len(trX), 128), range(128, len(trX), 128)):
cost = train(trX[start:end], trY[start:end])
print np.mean(np.argmax(teY, axis=1) == predict(teX))
if i % 10 == 0:
name = 'media/model/modnet-{0}.model'.format(str(i))
save_model(name, params)
name = 'media/model/modnet-final.model'
save_model(name, params)
def main_train():
trX, teX, trY, teY = mnist(onehot=True)
X = T.fmatrix()
Y = T.fmatrix()
w_h = init_weights((784, 625))
w_o = init_weights((625, 10))
params = [w_h, w_o]
py_x = model(X, params)
y_x = T.argmax(py_x, axis=1)
cost = T.mean(T.nnet.categorical_crossentropy(py_x, Y))
updates = sgd(cost, params)
train = theano.function(inputs=[X, Y],
outputs=cost,
updates=updates,
allow_input_downcast=True)
predict = theano.function(inputs=[X],
outputs=y_x,
allow_input_downcast=True)
for i in range(100):
for start, end in zip(range(0, len(trX), 128),
range(128, len(trX), 128)):
cost = train(trX[start:end], trY[start:end])
print np.mean(np.argmax(teY, axis=1) == predict(teX))
if i % 10 == 0:
name = 'media/model/net-{0}.model'.format(str(i))
save_model(name, params)
name = 'media/model/net-final.model'
save_model(name, params)
def run_regression(trials, batch_size):
train_x, test_x, train_y, test_y = mnist(onehot=True)
x_dim = len(train_x[0])
y_dim = len(train_y[0])
weight_vec = theano.shared(
np.random.randn(x_dim, y_dim) * INITIAL_WEIGHT_MAX)
offset = theano.shared(np.zeros(y_dim))
input_data = T.fmatrix('input_data')
label = T.fmatrix('label')
softmax_output = T.nnet.softmax(T.dot(input_data, weight_vec) + offset)
cost = T.mean(T.nnet.categorical_crossentropy(softmax_output, label))
weight_grad, offset_grad = T.grad(cost=cost, wrt=[weight_vec, offset])
updates = [[weight_vec, weight_vec - weight_grad * LEARNING_RATE],
[offset, offset - offset_grad * LEARNING_RATE]]
train_f = theano.function(inputs=[input_data, label],
outputs=cost,
updates=updates,
allow_input_downcast=True)
predicted_label = T.argmax(softmax_output, axis=1)
output_f = theano.function(inputs=[input_data],
outputs=predicted_label,
allow_input_downcast=True)
for i in range(trials):
for start, end in zip(range(0, len(train_x), batch_size),
range(batch_size, len(train_x), batch_size)):
cost = train_f(train_x[start:end], train_y[start:end])
print i, np.mean(np.argmax(test_y, axis=1) == output_f(test_x))
def main_rain():
trX, teX, trY, teY = mnist(onehot=True)
trX = trX.reshape(-1, 1, 28, 28)
teX = teX.reshape(-1, 1, 28, 28)
X = T.ftensor4()
Y = T.fmatrix()
w = init_weights((32, 1, 3, 3))
w2 = init_weights((64, 32, 3, 3))
w3 = init_weights((128, 64, 3, 3))
w4 = init_weights((128 * 3 * 3, 625))
w_o = init_weights((625, 10))
params = [w, w2, w3, w4, w_o]
noise_l1, noise_l2, noise_l3, noise_l4, noise_py_x = model(X, params, 0.2, 0.5)
l1, l2, l3, l4, py_x = model(X, params, 0., 0.)
y_x = T.argmax(py_x, axis=1)
cost = T.mean(T.nnet.categorical_crossentropy(noise_py_x, Y))
updates = RMSprop(cost, params, lr=0.001)
train = theano.function(inputs=[X, Y], outputs=cost, updates=updates, allow_input_downcast=True)
predict = theano.function(inputs=[X], outputs=y_x, allow_input_downcast=True)
for i in range(100):
for start, end in zip(range(0, len(trX), 128), range(128, len(trX), 128)):
cost = train(trX[start:end], trY[start:end])
print np.mean(np.argmax(teY, axis=1) == predict(teX))
if i % 10 == 0:
name = 'media/model/conv-{0}.model'.format(str(i))
save_model(name, params)
name = 'media/model/conv-final.model'
save_model(name, params)
def main_loop():
trX, teX, trY, teY = mnist(ntrain=ntrain,ntest=2000,onehot=True)
print "before", trX[30][0:10]
seq = mnist_with_noise([trX,trY],10)
print "after", trX[30][0:10]
X = T.fmatrix()
Y = T.fmatrix()
#grads = T.fvector()
w_h = [init_weights((784, 625)), init_weights((625, 10))]
py_x = model(X, w_h)
y_x = T.argmax(py_x, axis=1)
cost = T.mean(T.nnet.categorical_crossentropy(py_x, Y))
params = w_h
updates = sgd(cost, params)
grads = T.grad(cost=cost,wrt=params)
grad_for_norm = T.grad(cost=cost,wrt=params)
train = theano.function(inputs=[X, Y], outputs=[cost,grads[0],grads[1]], updates=updates, allow_input_downcast=True)
predict = theano.function(inputs=[X], outputs=y_x, allow_input_downcast=True)
get_grad = theano.function(inputs=[X,Y],outputs=[cost,grad_for_norm[0],grad_for_norm[1]], allow_input_downcast=True)
mb_size = 128
for i in range(2):
grad_list = []
for start, end in zip(range(0, len(trX), mb_size), range(mb_size, len(trX), mb_size)):
cost,grads[0],grads[1] = train(trX[start:end], trY[start:end])
print np.mean(np.argmax(teY, axis=1) == predict(teX))
noisy_grads = []
normal_grads = []
noisy_cost = []
normal_cost = []
mb_size = 1
n_predicts = 0
for i in seq:
cost,grad0,grad1 = get_grad(trX[i:i+1], trY[i:i+1])
norm = np.linalg.norm(grad0)
if i < 0.1*ntrain:
n_predicts += (np.argmax(trY[i:i+1], axis=1)==predict(trX[i:i+1]))
noisy_grads.append(norm)
noisy_cost.append(cost)
else:
normal_grads.append(norm)
normal_cost.append(cost)
print "noisy grad : mean,var - " ,np.mean(noisy_grads),np.var(noisy_grads)
print "normal grad: mean,var - " ,np.mean(normal_grads),np.var(normal_grads)
print "noisy cost : mean,var - " ,np.mean(noisy_cost),np.var(noisy_cost)
print "normal cost: mean,var - " ,np.mean(normal_cost),np.var(normal_cost)
print " noisy predicts out of 5000 -", n_predicts
plt.plot(noisy_grads)
plt.plot(normal_grads)
plt.savefig('grad0.jpeg')
def run_net(trials, batch_size):
train_x, test_x, train_y, test_y = mnist(onehot=True)
input_dim = len(train_x[0])
output_dim = len(test_y[0])
[w_h1, w_h2, weight_outputs] = build_weights([(input_dim, 625), (625, 625),
(625, output_dim)])
X = T.fmatrix() #symbolic variable for weight matrix
Y = T.fmatrix() #symbolic variable for output
# outputs from the layers with dropout
[dropout_h1, dropout_h2,
dropout_net_output] = forward_prop([X, w_h1, w_h2, weight_outputs],
[0.2, 0.5, 0.5, 0.5])
# outputs from the layers without dropout
[h1, h2, net_output] = forward_prop([X, w_h1, w_h2, weight_outputs],
[0., 0., 0., 0.])
# actual prediction
predicted_label = T.argmax(net_output, axis=1)
cost = T.mean(T.nnet.categorical_crossentropy(dropout_net_output, Y))
updates = RMSprop(cost, [w_h1, w_h2, weight_outputs])
net_train = function(inputs=[X, Y],
outputs=cost,
updates=updates,
allow_input_downcast=True)
get_net_output = function(inputs=[X],
outputs=predicted_label,
allow_input_downcast=True)
for trial in range(trials):
for batch_start in range(0, len(train_x) - batch_size, batch_size):
batch_end = batch_start + batch_size
net_train(train_x[batch_start:batch_end],
train_y[batch_start:batch_end])
print np.mean(np.argmax(test_y, axis=1) == get_net_output(test_x))
def main(self):
# Load training and test data
training_x, test_x, training_y, test_y = load.mnist(onehot=True)
# Symbolic variables
x = tensor.fmatrix()
y = tensor.fmatrix()
# Initialize weights
temp_weight = INPUT_SIZE
weights = []
for layer in self.layer_sizes:
weight = self.init_weights((temp_weight, layer))
weights.append(weight)
temp_weight = layer
weight = self.init_weights((temp_weight, OUTPUT_SIZE))
weights.append(weight)
# Initialize model
model_layer_noise = self.model2(x, weights, 0.2, 0.5)
model_layer_values = self.model2(x, weights, 0., 0.)
y_x = tensor.argmax(model_layer_values[-1], axis=1)
# Initialize the update function
cost = tensor.mean(tensor.nnet.categorical_crossentropy(
model_layer_noise[-1], y))
params = weights
updates = self.RMSprop(cost, params) # SGD / RMSprop
# Initialize core functionality
train = theano.function(
inputs=[x, y],
outputs=cost,
updates=updates,
allow_input_downcast=True)
self.predict = theano.function(
inputs=[x],
outputs=y_x,
allow_input_downcast=True)
# Training on mnist
print("\nTRAINING...")
for i in range(NUMBER_OF_RUNS):
for start, end in zip(range(0, len(training_x), BATCH_SIZE),
range(BATCH_SIZE, len(training_x), BATCH_SIZE)):
cost = train(training_x[start:end], training_y[start:end])
print("Iteration ", i+1, "/", NUMBER_OF_RUNS, "(",
numpy.mean(numpy.argmax(test_y, axis=1)
== self.predict(test_x))*100, ")")
# Testing
print("\nTESTING ON: MNIST TRAINING SET...")
print(numpy.mean(numpy.argmax(training_y, axis=1) ==
self.predict(training_x))*100, "percent correct")
print("\nTESTING ON: MNIST TEST SET...")
print(numpy.mean(numpy.argmax(test_y, axis=1)
== self.predict(test_x))*100, "percent correct")
def simple_nn():
# mnist dataset, training + test
trX, teX, trY, teY = mnist(onehot=True)
X = T.fmatrix()
Y = T.fmatrix()
# init the weights
w_h = init_weights((784, 625))
w_h2 = init_weights((625, 625))
w_o = init_weights((625, 10))
noise_h, noise_h2, noise_py_x = model(
X,
w_h,
w_h2,
w_o,
0.8,
0.5
)
h, h2, py_x = model(
X,
w_h,
w_h2,
w_o,
1.,
1.
)
y_x = T.argmax(py_x, axis=1)
cost = T.mean(T.nnet.categorical_crossentropy(noise_py_x, Y))
params = [w_h, w_h2, w_o]
updates = RMSprop(cost, params, lr=0.001)
train = theano.function(
inputs=[X, Y],
outputs=cost,
updates=updates,
allow_input_downcast=True
)
predict = theano.function(
inputs=[X],
outputs=y_x,
allow_input_downcast=True
)
f_out = open('res/res_dropout_nn', 'w')
for i in range(100): #you can adjust this if training takes too long
# train batches of 128 instances
for start, end in zip(range(0, len(trX), 128), range(128, len(trX), 128)):
cost = train(trX[start:end], trY[start:end])
print i
correct = np.mean(np.argmax(teY, axis=1) == predict(teX))
res = str(i) + " " + str(correct) + "\n"
f_out.write( res )
print 'Result dropout:', correct
def question2data():
trX, teX, trY, teY = mnist(ntrain=1000, ntest=250, onehot=False)
# keep threes and fours only
trX, trY = keep_threes_and_fours(trX, trY)
teX, teY = keep_threes_and_fours(teX, teY)
# converts 3 to 0, and 4 to 1 (two classes)
trY = convert_three_and_four_to_zero_and_one(trY)
teY = convert_three_and_four_to_zero_and_one(teY)
# FIXME: WE do not one hot; we can use a single output for binary classification
trX, trY = permute(trX, trY)
teX, teY = permute(teX, teY)
return trX, trY, teX, teY
def question2data():
trX, teX, trY, teY = mnist(ntrain=1000, ntest=250, onehot=False)
# keep threes and fours only
trX, trY = keep_threes_and_fours(trX, trY)
teX, teY = keep_threes_and_fours(teX, teY)
# converts 3 to 0, and 4 to 1 (two classes)
trY = convert_three_and_four_to_zero_and_one(trY)
teY = convert_three_and_four_to_zero_and_one(teY)
# FIXME: WE do not one hot; we can use a single output for binary classification
trX, trY = permute(trX, trY)
teX, teY = permute(teX, teY)
return trX, trY, teX, teY
def mnist_example(epochs = 10, verbose = False, save = False):
print "Initializing network"
mnet = ModernNeuralNetwork([784,625,860,10])
trX, teX, trY, teY = mnist(onehot=True)
print "Creating Model"
mnet.create_model_functions()
print "Training Network"
for i in range(epochs):
for start, end in zip(range(0, len(trX), 128), range(128, len(trX), 128)):
cost = mnet.train(trX[start:end], trY[start:end])
if verbose:
print np.mean(np.argmax(teY, axis=1) == mnet.predict(teX))
if save:
self.save_weights("MNIST_Weights.save")
print("Saved weights to \"MNIST_Weights.save\".")
def initiliaze(self): self.trX, self.teX, self.trY, self.teY = mnist(1000, 500, onehot=True) self.trX = self.trX.reshape(-1, 1, 28, 28) self.teX = self.teX.reshape(-1, 1, 28, 28) self.X = T.ftensor4() self.Y = T.fmatrix() self.w = self.init_weights((32, 1, 3, 3)) self.w2 = self.init_weights((64, 32, 3, 3)) self.w3 = self.init_weights((128, 64, 3, 3)) self.w4 = self.init_weights((128 * 3 * 3, 625)) self.w_o = self.init_weights((625, 10)) self.w=np.array(self.w) print type(self.w)
def export_wrong_samples(input_file, output_folder):
trX, vlX, teX, trY, vlY, teY = mnist(onehot=False, ndim=2)
with open(input_file, 'r') as f:
train_ws, train_c, valid_ws, valid_c, test_ws, test_c = pickle.load(f)
trX = np.asarray(trX[train_ws], dtype=np.uint8).reshape((-1, 28, 28))
trY = trY[train_ws]
vlX = np.asarray(vlX[valid_ws], dtype=np.uint8).reshape((-1, 28, 28))
vlY = vlY[valid_ws]
teX = np.asarray(teX[test_ws], dtype=np.uint8).reshape((-1, 28, 28))
teY = teY[test_ws]
export_image_array(trX, os.path.join(output_folder, 'train'), "")
export_classification_info(trY, train_c, os.path.join(output_folder, 'train'), "")
export_image_array(vlX, os.path.join(output_folder, 'valid'), "")
export_classification_info(vlY, valid_c, os.path.join(output_folder, 'valid'), "")
export_image_array(teX, os.path.join(output_folder, 'test'), "")
export_classification_info(teY, test_c, os.path.join(output_folder, 'test'), "")
def main():
# 数据集，数据格式为4D矩阵（样本数，特征图个数，图像行数，图像列数）
trX, teX, trY, teY = mnist(onehot=True)
h1, hpiece1, h2, hpiece2 = 625, 5, 625, 5
params = basicUtils.randomSearch(nIter=10)
cvErrorList = []
for param, num in zip(params, range(len(params))):
lr, C = param
print '*' * 40, num, 'parameters', param, '*' * 40
maxout = CMaxoutmlp(28 * 28, h1, hpiece1, h2, hpiece2, 10, lr, C, 0.2, 0.5)
cvError = maxout.cv(trX, trY)
cvErrorList.append(copy(cvError))
optIndex = np.argmin(cvErrorList, axis=0)
lr, C = params[optIndex]
print 'retraining', params[optIndex]
maxout = CMaxoutmlp(28 * 28, h1, hpiece1, h2, hpiece2, 10, lr, C, 0.2, 0.5)
maxout.trainmaxout(trX, teX, trY, teY)
def main():
f = open('output.txt', 'w')
train = np.genfromtxt('data/train_data.txt')
test = np.genfromtxt('data/test_data.txt')
val = np.genfromtxt('data/val_data.txt')
# Parse data for separating training labels and dataset
n_feat = train[0].size
train_data = train[:, :-1]
print len(train_data)
#print train_data[0]
train_labels = train[:, n_feat - 1]
print train_labels[0]
test_data = test[:, :-1]
test_labels = test[:, n_feat - 1]
val_data = val[:, :-1]
val_labels = val[:, n_feat - 1]
trX, teX, trY, teY = mnist(onehot=False)
print trY[0]
train_data = trX[:1000]
train_labels = trY[:1000]
test_labels = teY
test_data = teX
SlistX = []
SlistY = []
SlistX.append(trX[0])
SlistY.append(trY[0])
# Print training + validation error for the classifier
k_neighbors = [1]
for k in k_neighbors:
preds_train = knn_algorithm(SlistX, SlistY, train_data, k,
train_labels)
print len(SlistX)
preds_val = knn_algorithm(train_data, train_labels, val_data, k)
preds_test = knn_algorithm(train_data, train_labels, test_data, k)
f.write("%s-neighbors: \n" % k)
f.write("Training error: %s \n" %
(calc_error(train_labels, preds_train)))
f.write("Validation error: %s \n" %
(calc_error(val_labels, preds_val)))
f.write("Test error: %s \n" % (calc_error(test_labels, preds_test)))
f.write("\n")
def run_regression(trials, batch_size):
train_x, test_x, train_y, test_y = mnist(onehot=True)
x_dim = len(train_x[0])
y_dim = len(train_y[0])
weight_vec = theano.shared(np.random.randn(x_dim, y_dim) * INITIAL_WEIGHT_MAX)
offset = theano.shared(np.zeros(y_dim))
input_data = T.fmatrix('input_data')
label = T.fmatrix('label')
softmax_output = T.nnet.softmax(T.dot(input_data, weight_vec) + offset)
cost = T.mean(T.nnet.categorical_crossentropy(softmax_output, label))
weight_grad, offset_grad = T.grad(cost=cost, wrt=[weight_vec, offset])
updates = [[weight_vec, weight_vec - weight_grad * LEARNING_RATE], [offset, offset - offset_grad * LEARNING_RATE]]
train_f = theano.function(inputs=[input_data, label], outputs=cost, updates=updates, allow_input_downcast=True)
predicted_label = T.argmax(softmax_output, axis=1)
output_f = theano.function(inputs=[input_data], outputs=predicted_label, allow_input_downcast=True)
for i in range(trials):
for start, end in zip(range(0, len(train_x), batch_size), range(batch_size, len(train_x), batch_size)):
cost = train_f(train_x[start:end], train_y[start:end])
print i, np.mean(np.argmax(test_y, axis=1) == output_f(test_x))
def run_net(num_iters, batch_size): train_input, test_input, train_output, test_output = mnist(onehot=True) # reshape image vectors into 4 tensor format for convolution train_input = train_input.reshape(-1, 1, 28, 28) test_input = test_input.reshape(-1, 1, 28, 28) input_sym = T.ftensor4() output_sym = T.fmatrix() w = init_weights((8, 1, 5, 5)) # 8 filters of size 5 X 5 w2 = init_weights((8, 8, 3, 3)) # 8 filters of size 3 X 3 w3 = init_weights((392, 625)) # fully connected layer w_o = init_weights((625, 10)) # fully connected output layer # accumulator variables for RMS prop acc_w = init_weights((8, 1, 5, 5), initial_max_val=0.0) acc_w2 = init_weights((8, 8, 3, 3), initial_max_val=0.0) acc_w3 = init_weights((392, 625), initial_max_val=0.0) acc_wo = init_weights((625, 10), initial_max_val=0.0) noise_act_1_pooled, noise_act_2_flattened, noise_l4, noise_net_output = \ forward_prop(input_sym, w, w2, w3, w_o, 0.2, 0.5) act_1_pooled, act_2_flattened, l4, net_output = \ forward_prop(input_sym, w, w2, w3, w_o, 0., 0.) prediction = T.argmax(net_output, axis=1) cost = T.mean(T.nnet.categorical_crossentropy(noise_net_output, output_sym)) params = [w, w2, w3, w_o] accs = [acc_w, acc_w2, acc_w3, acc_wo] updates = rms_prop(cost, params, accs, lr=0.001) train = theano.function(inputs=[input_sym, output_sym], outputs=cost, updates=updates, \ allow_input_downcast=True) predict = theano.function(inputs=[input_sym], outputs=prediction, allow_input_downcast=True) for i in range(num_iters): for batch_start in range(0, len(train_input) - batch_size, batch_size): cost = train(train_input[batch_start:batch_start + batch_size], \ train_output[batch_start:batch_start + batch_size]) print np.mean(np.argmax(test_output, axis=1) == predict(test_input))
def read_data_sets(data_dir='/data/datasets/',
dtype=dtypes.float32,
reshape=True,
validation_size=1000):
train_images, test_images, train_labels, test_labels = mnist(data_dir)
validation_images = train_images[:validation_size]
validation_labels = train_labels[:validation_size]
train_images = train_images[validation_size:]
train_labels = train_labels[validation_size:]
train = DataSet(train_images, train_labels, dtype=dtype, reshape=reshape)
validation = DataSet(validation_images,
validation_labels,
dtype=dtype,
reshape=reshape)
test = DataSet(test_images, test_labels, dtype=dtype, reshape=reshape)
return base.Datasets(train=train, validation=validation, test=test)
def run_net(trials, batch_size): train_x, test_x, train_y, test_y = mnist(onehot=True) input_dim = len(train_x[0]) output_dim = len(test_y[0]) [w_h1, w_h2, weight_outputs] = build_weights([(input_dim, 625), (625, 625), (625, output_dim)]) X = T.fmatrix() #symbolic variable for weight matrix Y = T.fmatrix() #symbolic variable for output # outputs from the layers with dropout [dropout_h1, dropout_h2, dropout_net_output] = forward_prop([X, w_h1, w_h2, weight_outputs], [0.2, 0.5, 0.5, 0.5]) # outputs from the layers without dropout [h1, h2, net_output] = forward_prop([X, w_h1, w_h2, weight_outputs], [0., 0., 0., 0.]) # actual prediction predicted_label = T.argmax(net_output, axis=1) cost = T.mean(T.nnet.categorical_crossentropy(dropout_net_output, Y)) updates = RMSprop(cost, [w_h1, w_h2, weight_outputs]) net_train = function(inputs=[X, Y], outputs=cost, updates=updates, allow_input_downcast=True) get_net_output = function(inputs=[X], outputs=predicted_label, allow_input_downcast=True) for trial in range(trials): for batch_start in range(0, len(train_x) - batch_size, batch_size): batch_end = batch_start + batch_size net_train(train_x[batch_start:batch_end], train_y[batch_start:batch_end]) print np.mean(np.argmax(test_y, axis=1) == get_net_output(test_x))
def compute_grads_and_weights_mnist(A_indices, segment, L_measurements,ntrain=50000,ntest=10000,mb_size=128,nhidden=625 ):
trX, teX, trY, teY = mnist(ntrain=ntrain,ntest=ntest,onehot=True)
seq = mnist_with_noise([trX,trY],0)
X = T.fmatrix()
Y = T.fmatrix()
w_h = [init_weights((784, nhidden)), init_weights((nhidden, 10))]
py_x = model(X, w_h)
y_x = T.argmax(py_x, axis=1)
cost = T.mean(T.nnet.categorical_crossentropy(py_x, Y))
params = w_h
updates = sgd(cost, params)
grads = T.grad(cost=cost,wrt=params)
grad_for_norm = T.grad(cost=cost,wrt=params)
train = theano.function(inputs=[X, Y], outputs=[cost,grads[0],grads[1]], updates=updates, allow_input_downcast=True)
predict = theano.function(inputs=[X], outputs=[y_x,py_x], allow_input_downcast=True)
get_grad = theano.function(inputs=[X,Y],outputs=[cost,grad_for_norm[0],grad_for_norm[1]], allow_input_downcast=True)
for i in range(1):
for start, end in zip(range(0, len(trX), mb_size), range(mb_size, len(trX), mb_size)):
cost,grads0,grads1 = train(trX[start:end], trY[start:end])
y,p_y = predict(teX)
print np.mean(np.argmax(teY, axis=1) == y)
if sparsity_ind == False:
cost = -T.mean(
T.sum(target_y * T.log(pred_y) +
(1 - target_y) * T.log(1 - pred_y),
axis=1))
else:
cost = - T.mean(T.sum(target_y * T.log(pred_y) + (1 - target_y) * T.log(1 - pred_y), axis=1)) \
+ penalty*T.shape(h)[1]*(sparsity*T.log(sparsity) + (1-sparsity)*T.log(1-sparsity)) \
- penalty*sparsity*T.sum(T.log(T.mean(h, axis=0)+1e-6)) \
- penalty*(1-sparsity)*T.sum(T.log(1-T.mean(h, axis=0)+1e-6))
return cost
trX, teX, trY, teY = mnist() # use all data
#trX, trY = trX[:1000], trY[:1000]
#teX, teY = teX[:200], teY[:200]
x = T.fmatrix('x')
d = T.fmatrix('d')
rng = np.random.RandomState(123)
theano_rng = RandomStreams(rng.randint(2**30))
# Initialise weights and bias for auto-encoder
# Encoding layers
W1 = init_weights(28 * 28, 900)
b1 = init_bias(900)
W2 = init_weights(900, 625)
b2 = init_bias(625)
return np.asarray(X, dtype=theano.config.floatX)
def init_weights(shape):
return theano.shared(floatX(np.random.randn(*shape) * 0.01))
def model(X, w):
return T.nnet.softmax(T.dot(X, w))
start_time = time.time()
##################################################
data_folder = 'truncated_data' ###################
dimension = 331 ###################################
##################################################
trX, teX, trY, teY = mnist(onehot=True, datasets_dir=os.getcwd() + '/' + data_folder + '_' + str(dimension) + '/', dimension=dimension)
X = T.fmatrix()
Y = T.fmatrix()
w = init_weights((math.pow(dimension, 2), 2))
py_x = model(X, w)
y_pred = T.argmax(py_x, axis=1)
cost = T.mean(T.nnet.categorical_crossentropy(py_x, Y))
gradient = T.grad(cost=cost, wrt=w)
update = [[w, w - gradient * 0.0001]]
train = theano.function(inputs=[X, Y], outputs=cost, updates=update, allow_input_downcast=True)
predict = theano.function(inputs=[X], outputs=y_pred, allow_input_downcast=True)
import numpy as np
from load import mnist
# takes care of conversions to make your stuff theano-friendly: float32 or float64
def floatX(X):
return np.asarray(X, dtype=theano.config.floatX)
def init_weights(shape):
return theano.shared(floatX(np.random.randn(*shape) * 0.01)) #initialiaze to a some gaussian
# our model in matrix format
def model(X, w):
return T.nnet.softmax(T.dot(X, w))
# training matrices
trX, teX, trY, teY = mnist(onehot=True) #one hot encoding!
X = T.fmatrix()
Y = T.fmatrix()
w = init_weights((784, 10))
# probability of the labels, given the input
py_x = model(X, w)
y_pred = T.argmax(py_x, axis=1)
# categorical cross entropy is basically telling us to maximize the value that's true
cost = T.mean(T.nnet.categorical_crossentropy(py_x, Y))
gradient = T.grad(cost=cost, wrt=w)
update = [[w, w - gradient * 0.05]]
def initialize_mnist(self):
self.trX, self.teX, self.trY, self.teY = mnist(onehot = True)
self.trX = self.trX.reshape(-1, 1, 28, 28)
self.teX = self.teX.reshape(-1, 1, 28, 28)
self.set_weights("mnist")
X_hat = model(X, weights_layer_1, weights_layer_y, bias_layer_1, bias_layer_y)
# Loss
L = - T.sum(X * T.log(X_hat) + (1 - X) * T.log(1 - X_hat), axis=1)
loss = T.mean(L)
# Parameter Updating
params = [weights_layer_y, bias_layer_y, weights_layer_1, bias_layer_1]
updates = sgd(loss, params, lr=learning_rate)
# Compiling
train = theano.function(inputs=[X], outputs=loss, updates=updates, allow_input_downcast=True, on_unused_input='warn')
predict = theano.function(inputs=[X], outputs=X_hat, allow_input_downcast=True)
# Load the data
trX, teX, trY, teY = mnist(scale_data=False)
n_batches_train = trX.shape[0] / batch_size
# Training
for i in range(epochs):
cost_per_batch = np.zeros(n_batches_train)
pred_cost_per_batch = np.zeros(n_batches_train)
cost = []
for start, end in zip(range(0, n_batches_train * batch_size, batch_size),
range(batch_size, n_batches_train * batch_size, batch_size)):
cost.append(train(trX[start:end]))
print "Epoch number {0}".format(i)
print 'Mean Cost per Batch %s' % str(i), np.mean(cost)
lr = lr_0 * np.exp( -n / float(n_epochs_organizing_phase) )
if lr < lr_min:
return lr_min
else:
return lr
def init_neighborhood_size(map_shape):
m, n = map_shape
sigma_0 = np.sqrt(m**2 + n**2) / 2.
return sigma_0
def init_timeconstant(n_epochs_organizing_phase, sigma_0):
return float(n_epochs_organizing_phase) / np.log(sigma_0)
trX, teX, trY, teY = mnist(ntrain=60000, ntest=10000, onehot=False)
xmin_val = trX[0].min()
xmax_val = trX[0].max()
def remove_threes_and_fours(X, Y):
""" Y: array-like, shape (n_examples,) """
three_idxs = np.where(Y == 3)
four_idxs = np.where(Y == 4)
ia = np.indices(Y.shape)
remaining_idxs = np.setxor1d(ia, np.concatenate((three_idxs[0], four_idxs[0])))
return X[remaining_idxs], Y[remaining_idxs]
if raw_input('remove_classes 3 and 4? (y/n)') == 'y':
trX, trY = remove_threes_and_fours(trX, trY)
teX, teY = remove_threes_and_fours(teX, teY)
def conv_nn():
# mnist dataset, training + test
trX, teX, trY, teY = mnist(onehot=True)
trX = trX.reshape(-1, 1, 28, 28)
teX = teX.reshape(-1, 1, 28, 28)
X = T.ftensor4()
Y = T.fmatrix()
# init the weights
# isotropic filters: (5,5)
# anisotropic filters: (6,3) and (3,6)
w_1 = init_weights((32, 1, 5, 5))
w_2 = init_weights((64, 32, 5, 5))
w_3 = init_weights((128, 64, 2, 2))
#number of pixel in last conv layer:
#for isotropic filter: num_filter * pix_per_filter = 128 * 9 = 1152
#for anisotropic filter: num_filter * pix_per_filter = 128 * 8 = 1024
w_h2 = init_weights((1152, 625 ))
w_o = init_weights((625, 10))
noise_out_1, noise_out_2, noise_out_2, noise_h2, noise_py_x = model_conv(
X,
w_1,
w_2,
w_3,
w_h2,
w_o,
0.8,
0.5
)
out_1, out_2, out_3, h2, py_x = model_conv(
X,
w_1,
w_2,
w_3,
w_h2,
w_o,
1.,
1.
)
y_x = T.argmax(py_x, axis=1)
cost = T.mean(T.nnet.categorical_crossentropy(noise_py_x, Y))
params = [w_1, w_2, w_3, w_h2, w_o]
updates = RMSprop(cost, params, lr=0.001)
train = theano.function(
inputs=[X, Y],
outputs=cost,
updates=updates,
allow_input_downcast=True
)
predict = theano.function(
inputs=[X],
outputs=y_x,
allow_input_downcast=True
)
f_out = open('res/res_conv_aniso_nn', 'w')
for i in range(100): #you can adjust this if training takes too long
for start, end in zip(range(0, len(trX), 128), range(128, len(trX), 128)):
cost = train(trX[start:end], trY[start:end])
print i
correct = np.mean(np.argmax(teY, axis=1) == predict(teX))
res = str(i) + " " + str(correct) + "\n"
f_out.write( res )
print 'Result Conv:', correct
fweights = w_1.get_value()
# save the filters of the first layer
for i in range(fweights.shape[0]):
fname = 'res/filters_aniso/filter_' + str(i)
np.save(fname, fweights[i,0,:,:])
print("Sending index ", i2, "from server to worker", process)
process += 1
for process in range(1, size):
comm.isend(-1, dest=process, tag=1)
def floatX(X):
return np.asarray(X, dtype=theano.config.floatX)
def init_weights(shape):
return theano.shared(floatX(np.random.randn(*shape) * 0.01))
def model(X, w):
return T.nnet.softmax(T.dot(X, w))
trX, teX, trY, teY = mnist(onehot=True)
X = T.fmatrix()
Y = T.fmatrix()
w = init_weights((784, 10))
w0 = theano.shared(value=np.zeros((784, 10), dtype=theano.config.floatX))
proc = 1
w_tilde = w.copy()
#broadcast w_tilde
while proc < size:
comm.isend(w_tilde, dest=proc, tag=2)
proc += 1
for proc in range(1, size):
comm.isend(-1, dest=proc, tag=2)
def main():
trX, teX, trY, teY = mnist(onehot=True)
trX = trX.reshape(-1, 1, 28, 28)
teX = teX.reshape(-1, 1, 28, 28)
dtype0 = 'float32'
dtype1 = 'float64'
X = T.ftensor4()
Y = T.fmatrix()
w = init_weights((32, 1, 3, 3), dtype0)
w2 = init_weights((64, 32, 3, 3), dtype0)
w3 = init_weights((128, 64, 3, 3), dtype0)
w4 = init_weights((128 * 3 * 3, 625), dtype0)
w_o = init_weights((625, 10), dtype0)
trX, trY, X, Y = cast_4(trX, trY, X, Y, dtype0)
noise_l1, noise_l2, noise_l3, noise_l4, noise_py_x = model(
X, w, w2, w3, w4, w_o, 0.2, 0.5, dtype0)
l1, l2, l3, l4, py_x = model(X, w, w2, w3, w4, w_o, 0., 0., dtype0)
y_x = T.argmax(py_x, axis=1)
cost = T.mean(T.nnet.categorical_crossentropy(noise_py_x, Y))
params = [w, w2, w3, w4, w_o]
updates = RMSprop(cost, params, dtype0, lr=0.001)
train = theano.function(inputs=[X, Y],
outputs=cost,
updates=updates,
allow_input_downcast=True)
predict = theano.function(inputs=[X],
outputs=y_x,
allow_input_downcast=True)
# train_model with mini-batch training
for i in range(1):
start_time = time.time()
for start, end in zip(range(0, len(trX), 128),
range(128, len(trX), 128)):
print(start, ' ', end)
cost = train(trX[start:end], trY[start:end])
print("--- %s seconds ---" % (time.time() - start_time))
pred_teX = predict(teX)
print(np.mean(np.argmax(teY, axis=1) == pred_teX))
w = theano.shared(value=np.asarray(w.eval(), dtype=dtype1),
name='w',
borrow=True)
w2 = theano.shared(value=np.asarray(w2.eval(), dtype=dtype1),
name='w2',
borrow=True)
w3 = theano.shared(value=np.asarray(w3.eval(), dtype=dtype1),
name='w3',
borrow=True)
w4 = theano.shared(value=np.asarray(w4.eval(), dtype=dtype1),
name='w4',
borrow=True)
w_o = theano.shared(value=np.asarray(w_o.eval(), dtype=dtype1),
name='w_o',
borrow=True)
trX, trY, X, Y = cast_4(trX, trY, X, Y, dtype1)
noise_l1 = T.cast(noise_l1, dtype=dtype1)
noise_l2 = T.cast(noise_l2, dtype=dtype1)
noise_l3 = T.cast(noise_l3, dtype=dtype1)
noise_l4 = T.cast(noise_l4, dtype=dtype1)
noise_py_x = T.cast(noise_py_x, dtype=dtype1)
l1 = T.cast(l1, dtype=dtype1)
l2 = T.cast(l2, dtype=dtype1)
l3 = T.cast(l3, dtype=dtype1)
l4 = T.cast(l4, dtype=dtype1)
for i in range(1):
start_time = time.time()
for start, end in zip(range(0, len(trX), 128),
range(128, len(trX), 128)):
print(start, ' ', end)
cost = train(trX[start:end], trY[start:end])
print("--- %s seconds ---" % (time.time() - start_time))
pred_teX = predict(teX)
print(np.mean(np.argmax(teY, axis=1) == pred_teX))
print("Finished!")
def model(X, w_h, w_o):
h = T.nnet.sigmoid(T.dot(X, w_h))
py_x = T.nnet.softmax(T.dot(h, w_o))
return py_x
def sgd(cost, params, learning_rate=0.05):
grads = T.grad(cost=cost, wrt=params)
updates = []
for p, g in zip(params, grads):
updates.append([p, p - g * learning_rate])
return updates
trainX, testX, trainY, testY = load.mnist(onehot=True)
X = T.fmatrix()
Y = T.fmatrix()
hidden_layer_size = 625
w_h = init_weights(shape=(trainX.shape[1], hidden_layer_size))
w_o = init_weights(shape=(hidden_layer_size, trainY.shape[1]))
py_x = model(X, w_h, w_o)
y_prediction = T.argmax(py_x, axis=1)
cost = T.mean(T.nnet.categorical_crossentropy(py_x, Y))
params = [w_h, w_o]
updates = sgd(cost, params)
import numpy as np
from sklearn.linear_model import LogisticRegression
import load
import convnet
if __name__ == "__main__":
print("\nLoading Data...")
load_activations = convnet.ConvolutionalNeuralNetwork().load_data
num_chunks = 20
trAs = [load_activations("saved/trA{0:02d}.txt".format(i), (60000 / num_chunks, 625)) for i in range(num_chunks)]
trA = np.concatenate(trAs)
print("trA.shape: {0}".format(trA.shape))
teA = load_activations("saved/teA.txt", (10000, 625))
print("teA.shape: {0}".format(teA.shape))
trX, teX, trY, teY = load.mnist(onehot=True)
trC = np.argmax(trY, axis=1)
print("trC.shape: {0}".format(trC.shape))
teC = np.argmax(teY, axis=1)
print("teC.shape: {0}".format(teC.shape))
print("Done.")
print("\nCreating Regression Model...")
lr = LogisticRegression()
lr.fit(trA, trC)
print("Done.")
print("\nAnalyzing Training Data...")
predictions = lr.predict(trA)
print("predictions.shape: {0}".format(predictions.shape))
accuracy = np.mean(predictions == trC)
w = np.swapaxes(w, 0, 1)
w = w.reshape(w.shape[0], 1, dim, dim)
print(dim)
print(w.shape)
Plots.plot_filters(w, 1, idx, "layer" + str(i+1))
return
def plotter(samples, predictions, Ws, img_x, idx):
plot_all_filters(Ws, idx)
shp = (samples.shape[0], 1, img_x, img_x)
samples = samples.reshape(shp)
predictions = predictions.reshape(shp)
Plots.plot_predictions_grid(samples, predictions, i, shp)
return
trX, trY, teX, teY, channels, img_x = mnist(onehot=True)
trX = trX.reshape(trX.shape[0], 784)
teX = teX.reshape(teX.shape[0], 784)
X = T.fmatrix()
layers = [784, 100, 10, 100, 784]
Ws = get_params(layers)
noise_out = model(X, Ws, 0.2, 0.5)
clean_out = model(X, Ws, 0., 0.)
noise_L = T.sum((X - noise_out)**2, axis=1)
noise_cost = noise_L.mean()
clean_L = T.sum((X - clean_out)**2, axis=1)
clean_cost = clean_L.mean()
import theano.tensor as T
import numpy as np
import time
from load import mnist
def floatX(X): # convert to correct dtype
return np.asarray(X, dtype=theano.config.floatX)
def init_weights(shape): # initialize model parameters
return theano.shared(floatX(np.random.randn(*shape) * 0.001), borrow=True)
def model (X, w): # model in matrix format
return T.nnet.softmax(T.dot(X, w))
trX, teX, trY, teY = mnist(onehot=True) # loading data matrices
X = T.fmatrix()
Y = T.fmatrix()
w = init_weights((784, 10)) # 784 = 28 * 28 size
py_x = model(X, w)
y_pred = T.argmax(py_x, axis=1) # probability outputs and maxima predictions
cost = T.mean(T.nnet.categorical_crossentropy(py_x, Y)) # classification metric to optimize
gradient = T.grad(cost=cost, wrt=w)
updates = [[w, w - 0.05 * gradient]]
train = theano.function(inputs=[X, Y], outputs=[cost, y_pred], updates=updates, allow_input_downcast=True)
predict = theano.function(inputs=[X], outputs=y_pred, allow_input_downcast=True)
# 1 encoder, decoder and a softmax layer
def init_weights(n_visible, n_hidden):
initial_W = np.asarray(
np.random.uniform(
low=-4 * np.sqrt(6. / (n_hidden + n_visible)),
high=4 * np.sqrt(6. / (n_hidden + n_visible)),
size=(n_visible, n_hidden)),
dtype=theano.config.floatX)
return theano.shared(value=initial_W, name='W', borrow=True)
def init_bias(n):
return theano.shared(value=np.zeros(n,dtype=theano.config.floatX),borrow=True)
trX, teX, trY, teY = mnist()
trX, trY = trX[:12000], trY[:12000]
teX, teY = teX[:2000], teY[:2000]
x = T.fmatrix('x')
d = T.fmatrix('d')
rng = np.random.RandomState(123)
theano_rng = RandomStreams(rng.randint(2 ** 30))
corruption_level=0.1
training_epochs = 25
learning_rate = 0.1
batch_size = 128
#Momentum
#Decay parameter ??
def sgd_momentum(cost, params, lr=0.1, decay=0.0001, momentum=0.1):
grads = T.grad(cost=cost, wrt=params)
updates = []
for p, g in zip(params, grads):
v = theano.shared(p.get_value())
v_new = momentum * v - (g + decay * p) * lr
updates.append([p, p + v_new])
updates.append([v, v_new])
return updates
trX, teX, trY, teY = mnist()
trX, trY = trX[:12000], trY[:12000]
teX, teY = teX[:2000], teY[:2000]
x = T.fmatrix('x')
d = T.fmatrix('d')
rng = np.random.RandomState(123)
theano_rng = RandomStreams(rng.randint(2**30))
corruption_level = 0.1
training_epochs = 5
learning_rate = 0.1
batch_size = 128
beta = 0.5
def initialize_mnist(self):
self.trX, self.teX, self.trY, self.teY = mnist(onehot=True)
self.w_h = self.init_weights((784, 625))
self.w_h2 = self.init_weights((625, 625))
self.w_o = self.init_weights((625, 10))
data_nn = np.loadtxt('res/res_simple_nn')
data_dropout = np.loadtxt('res/res_dropout_nn')
data_prelu = np.loadtxt('res/res_prelu_nn')
data_conv = np.loadtxt('res/res_conv_nn')
data_aniso = np.loadtxt('res/res_conv_aniso_nn')
# isotropic_filter
#filter0 = np.load('res/filter/filter_0.npy')
#filter1 = np.load('res/filter/filter_15.npy')
#filter2 = np.load('res/filter/filter_30.npy')
# anisotropic filter
filter0 = np.load('res/filters_aniso/filter_0.npy')
filter1 = np.load('res/filters_aniso/filter_15.npy')
filter2 = np.load('res/filters_aniso/filter_30.npy')
trX, teX, trY, teY = mnist(ntrain = 10, ntest = 10)
#plot_trainerror(data_nn,data_dropout,data_prelu,data_conv)
#plot_single(data_aniso)
plot_greyscale(filter0, 'filter0')
im = trX[5].reshape( (28,28) )
conv = convolve(im, filter0)
plot_greyscale(conv, 'convolution')
plot_greyscale(filter1, 'filter15')
conv = convolve(im, filter1)
plot_greyscale(conv, 'convolution')
plot_greyscale(filter2, 'filter30')
conv = convolve(im, filter2)
plot_greyscale(conv, 'convolution')
def model(X, w1, s1, theta1, t1, w2, s2, theta2, t2, D, G, p_drop_lista, p_drop_hidden):
a1 = L.lista(X, w1, s1, theta1, t1)
a1 = L.dropout(a1, p_drop_lista)
y = T.dot(a1, G)
y = L.dropout(y, p_drop_hidden)
a2 = L.lista(y, w2, s2, theta2, t2)
a2 = L.dropout(a2, p_drop_lista)
x_o = T.dot(a2, D)
return a1, y, a2, x_o
trX, teX, _, trY, teY, _ = mnist(onehot=False)
IM_SIZE = 28 * 28
Y_SIZE = 50
BATCH_SIZE = 256
t1 = 3
t2 = 3
X = T.fmatrix()
Y = T.fmatrix()
dict_size = IM_SIZE * 4
LOAD_OLD = True
if not LOAD_OLD:
w1 = L.init_weights([IM_SIZE, dict_size])
s1 = L.init_weights([dict_size, dict_size])
theta1 = L.init_weights([dict_size])
def main_loop():
trX, teX, trY, teY = mnist(ntrain=ntrain,ntest=2000,onehot=True)
print "before", trX[30][0:10]
seq = mnist_with_noise([trX,trY],10)
print "after", trX[30][0:10]
X = T.fmatrix()
Y = T.fmatrix()
#grads = T.fvector()
w_h = [init_weights((784, 625)), init_weights((625, 10))]
py_x = model(X, w_h)
y_x = T.argmax(py_x, axis=1)
pre_softmax = get_pre_softmax_func(X, w_h)
cost = T.mean(T.nnet.categorical_crossentropy(py_x, Y))
params = w_h
updates = sgd(cost, params)
grads = T.grad(cost=cost,wrt=params)
grad_for_norm = T.grad(cost=cost,wrt=params)
train = theano.function(inputs=[X, Y], outputs=[cost,grads[0],grads[1]], updates=updates, allow_input_downcast=True)
predict = theano.function(inputs=[X], outputs=[y_x,py_x], allow_input_downcast=True)
get_grad = theano.function(inputs=[X,Y],outputs=[cost,grad_for_norm[0],grad_for_norm[1],pre_softmax], allow_input_downcast=True)
#get_pre_softmax = theano.function([X],)
mb_size = 128
for i in range(1):
grad_list = []
for start, end in zip(range(0, len(trX), mb_size), range(mb_size, len(trX), mb_size)):
cost,grads0,grads1 = train(trX[start:end], trY[start:end])
y,p_y = predict(teX)
print np.mean(np.argmax(teY, axis=1) == y)
noisy_grads = []
normal_grads = []
noisy_cost = []
normal_cost = []
mb_size = 1
n_predicts = 0
noisy_pre_softmax_norm = []
normal_pre_softmax_norm = []
for i in seq:
cost,grad0,grad1,pre_soft = get_grad(trX[i:i+1], trY[i:i+1])
norm = np.linalg.norm(grad0)
y,py = predict(trX[i:i+1])
if i < 0.1*ntrain:
n_predicts += (np.argmax(trY[i:i+1], axis=1)==y)
noisy_grads.append(norm)
noisy_cost.append(cost)
noisy_pre_softmax_norm.append(np.linalg.norm(pre_soft))
else:
normal_grads.append(norm)
normal_cost.append(cost)
normal_pre_softmax_norm.append(np.linalg.norm(pre_soft))
print "noisy grad : mean,var - " ,np.mean(noisy_grads),np.var(noisy_grads)
print "normal grad: mean,var - " ,np.mean(normal_grads),np.var(normal_grads)
print "noisy cost : mean,var - " ,np.mean(noisy_cost),np.var(noisy_cost)
print "normal cost: mean,var - " ,np.mean(normal_cost),np.var(normal_cost)
print "noisy pre_softmax norm : mean,var - " ,np.mean(noisy_pre_softmax_norm),np.var(noisy_pre_softmax_norm)
print "normal pre softmax norm : mean,var - " ,np.mean(normal_pre_softmax_norm),np.var(normal_pre_softmax_norm)
print " noisy predicts out of 5000 -", n_predicts
plt.plot(noisy_grads)
plt.plot(normal_grads)
plt.savefig('grad0.jpeg')
def main(self):
# Load training and test data
training_x, test_x, training_y, test_y = load.mnist(onehot=True)
# Symbolic variables
x = tensor.fmatrix()
y = tensor.fmatrix()
# Initialize weights
temp_weight = INPUT_SIZE
weights = []
for layer in self.layer_sizes:
weight = self.init_weights((temp_weight, layer))
weights.append(weight)
temp_weight = layer
weight = self.init_weights((temp_weight, OUTPUT_SIZE))
weights.append(weight)
# Initialize model
model_layer_noise = self.model2(x, weights, 0.2, 0.5)
model_layer_values = self.model2(x, weights, 0., 0.)
y_x = tensor.argmax(model_layer_values[-1], axis=1)
# Initialize the update function
cost = tensor.mean(
tensor.nnet.categorical_crossentropy(model_layer_noise[-1], y))
params = weights
updates = self.RMSprop(cost, params) # SGD / RMSprop
# Initialize core functionality
train = theano.function(inputs=[x, y],
outputs=cost,
updates=updates,
allow_input_downcast=True)
self.predict = theano.function(inputs=[x],
outputs=y_x,
allow_input_downcast=True)
# Training on mnist
print("\nTRAINING...")
for i in range(NUMBER_OF_RUNS):
for start, end in zip(
range(0, len(training_x), BATCH_SIZE),
range(BATCH_SIZE, len(training_x), BATCH_SIZE)):
cost = train(training_x[start:end], training_y[start:end])
print(
"Iteration ", i + 1, "/", NUMBER_OF_RUNS, "(",
numpy.mean(
numpy.argmax(test_y, axis=1) == self.predict(test_x)) *
100, ")")
# Testing
print("\nTESTING ON: MNIST TRAINING SET...")
print(
numpy.mean(
numpy.argmax(training_y, axis=1) == self.predict(training_x)) *
100, "percent correct")
print("\nTESTING ON: MNIST TEST SET...")
print(
numpy.mean(numpy.argmax(test_y, axis=1) == self.predict(test_x)) *
100, "percent correct")
reconstruction_mse = T.dot(reconstruction_dims.T, (X - X_hat)**2)/T.sum(T.neq(reconstruction_dims, 0.))
prediction_mse = T.dot(prediction_dims.T, (X - X_hat)**2)/T.sum(T.neq(prediction_dims, 0.))
# Parameter Updating
params = [weights_layer_1, weights_layer_mu, weights_layer_sig, weights_layer_2, weights_layer_y, bias_layer_1,
bias_layer_mu, bias_layer_sig, bias_layer_2, bias_layer_y]
updates = RMSprop(-L, params, lr=learning_rate)
# Compiling
train = theano.function(inputs=[X, epsilon], outputs=[L, log_lik, D_KL], updates=updates, allow_input_downcast=True)
predict = theano.function(inputs=[X, epsilon], outputs=[model_input, X_hat, T.mean(reconstruction_mse),
T.mean(prediction_mse)], allow_input_downcast=True)
crop = theano.function(inputs=[X], outputs=crop_X, allow_input_downcast=True)
# Load the data
trX, teX, trY, teY = mnist(scale_data=False, add_noise=False, add_pattern=False)
n_batches_train = trX.shape[0] / batch_size
for i in range(epochs):
L_per_batch = np.zeros(n_batches_train)
log_lik_per_batch = np.zeros(n_batches_train)
D_KL_per_batch = np.zeros(n_batches_train)
batch_num = 0
for start, end in zip(range(0, n_batches_train * batch_size, batch_size),
range(batch_size, n_batches_train * batch_size, batch_size)):
e = np.random.normal(0, 1, (batch_size, n_z))
batch_L, batch_log_lik, batch_D_KL = train(trX[start:end], e)
L_per_batch[batch_num] = batch_L
import load
import convnet
if __name__ == "__main__":
print("\nLoading Data...")
load_activations = convnet.ConvolutionalNeuralNetwork().load_data
num_chunks = 20
trAs = [
load_activations("saved/trA{0:02d}.txt".format(i),
(60000 / num_chunks, 625)) for i in range(num_chunks)
]
trA = np.concatenate(trAs)
print("trA.shape: {0}".format(trA.shape))
teA = load_activations("saved/teA.txt", (10000, 625))
print("teA.shape: {0}".format(teA.shape))
trX, teX, trY, teY = load.mnist(onehot=True)
trC = np.argmax(trY, axis=1)
print("trC.shape: {0}".format(trC.shape))
teC = np.argmax(teY, axis=1)
print("teC.shape: {0}".format(teC.shape))
print("Done.")
print("\nCreating Regression Model...")
lr = LogisticRegression()
lr.fit(trA, trC)
print("Done.")
print("\nAnalyzing Training Data...")
predictions = lr.predict(trA)
print("predictions.shape: {0}".format(predictions.shape))
accuracy = np.mean(predictions == trC)
# Compiling
train = theano.function(inputs=[X, epsilon],
outputs=[L, log_lik, D_KL],
updates=updates,
allow_input_downcast=True)
predict = theano.function(inputs=[X, epsilon],
outputs=[
model_input, X_hat,
T.mean(reconstruction_mse),
T.mean(prediction_mse)
],
allow_input_downcast=True)
# Load the data
trX, teX, trY, teY = mnist(scale_data=False)
n_batches_train = trX.shape[0] / batch_size
for i in range(epochs):
L_per_batch = np.zeros(n_batches_train)
log_lik_per_batch = np.zeros(n_batches_train)
D_KL_per_batch = np.zeros(n_batches_train)
batch_num = 0
for start, end in zip(
range(0, n_batches_train * batch_size, batch_size),
range(batch_size, n_batches_train * batch_size, batch_size)):
e = np.random.normal(0, 1, (batch_size, n_z))
batch_L, batch_log_lik, batch_D_KL = train(trX[start:end], e)
L_per_batch[batch_num] = batch_L
log_lik_per_batch[batch_num] = batch_log_lik
from svdResNet import svdResNet
from load import mnist
import sys
def usageAndExit():
print "Useage: python run_mlp.py [Net]\n Net=svdMLP/MLP"
sys.exit(0)
if len(sys.argv) < 2:
usageAndExit()
netType = sys.argv[1]
trX, teX, trY, teY = mnist(onehot=False)
print "Training data: ", trX.shape, trY.shape
print "Test data: ", teX.shape, teY.shape
n_in = 28 * 28
n_out = 10
n_h = 128
n_r = 16
n_layers = 10
m = 0.1
num_epoch = 1 #50
batchsize = 1000
validation_int = 100
learning_rate = 0.0001
test_accuracy = test_acc / test_batches
print(" " + prefix + " loss:\t\t{:.6f}\t{:.6f}".format(average_test_score, class_err))
print(" " + prefix + " accuracy:\t{:.6f} %".format(
test_accuracy * 100))
return average_test_score, test_accuracy, wrong_samples, wrong_classification
# -----------------------LOAD IMAGES AND LABELS----------------------------#
print('Loading data')
# Load index of labeled images in train set
with open(os.path.join(DATA_PATH, 'labeled_index.pkl'), 'r') as f:
labeled_idx = pickle.load(f)
# Load image and label of train, validation, test set
trX, vlX, teX, trY, vlY, teY = mnist(onehot=True, normalize_axes=None, ndim=2)
IM_SIZE = trX.shape[1]
# with open('../data/pca_model.pkl','r') as f:
# pca = pickle.load(f)
# trX=pca.transform(trX)
# vlX=pca.transform(vlX)
# teX=pca.transform(teX)
# -----------------------SET PARAMETERS-------------------------#
losses_ratio = run_parameters.losses_ratio
supervised_cost_fun = run_parameters.supervised_cost_fun
# -----------------------CREATE RUN FUNCTIONS------------------#
# Creating the computation graph
print('Building computation graph')
input_var = T.fmatrix('input_var')
import numpy as np from load import mnist trX, vlX, _, _, _, _ = mnist() trX = np.concatenate((trX, vlX))
l2a = rectify(conv2d(l1, w2))
l2 = max_pool_2d(l2a, (2, 2))
l2 = dropout(l2, p_drop_conv)
l3a = rectify(conv2d(l2, w3))
l3b = max_pool_2d(l3a, (2, 2))
l3 = T.flatten(l3b, outdim=2)
l3 = dropout(l3, p_drop_conv)
l4 = rectify(T.dot(l3, w4))
l4 = dropout(l4, p_drop_hidden)
pyx = softmax(T.dot(l4, w_o))
return l1, l2, l3, l4, pyx
trX, teX, trY, teY = mnist(onehot=True)
trX = trX.reshape(-1, 1, 28, 28)
teX = teX.reshape(-1, 1, 28, 28)
X = T.ftensor4()
Y = T.fmatrix()
w = init_weights((32, 1, 3, 3))
w2 = init_weights((64, 32, 3, 3))
w3 = init_weights((128, 64, 3, 3))
w4 = init_weights((128 * 3 * 3, 625))
w_o = init_weights((625, 10))
noise_l1, noise_l2, noise_l3, noise_l4, noise_py_x = model(X, w, w2, w3, w4, 0.2, 0.5)
l1, l2, l3, l4, py_x = model(X, w, w2, w3, w4, 0., 0.)
return lr_min
else:
return lr
def init_neighborhood_size(map_shape):
m, n = map_shape
sigma_0 = np.sqrt(m**2 + n**2) / 2.
return sigma_0
def init_timeconstant(n_epochs_organizing_phase, sigma_0):
return float(n_epochs_organizing_phase) / np.log(sigma_0)
trX, teX, trY, teY = mnist(ntrain=60000, ntest=10000, onehot=False)
xmin_val = trX[0].min()
xmax_val = trX[0].max()
def remove_threes_and_fours(X, Y):
""" Y: array-like, shape (n_examples,) """
three_idxs = np.where(Y == 3)
four_idxs = np.where(Y == 4)
ia = np.indices(Y.shape)
remaining_idxs = np.setxor1d(ia,
np.concatenate((three_idxs[0], four_idxs[0])))
return X[remaining_idxs], Y[remaining_idxs]
if raw_input('remove_classes 3 and 4? (y/n)') == 'y':