Exemplos de TCGAData.get_gene_exp_matrix em Python

Exemplo n.º 1

Arquivo: naiveBayes.py Projeto: susanctu/229project

def main():
    data = TCGAData()
    gene_exp = data.get_gene_exp_matrix()
    labels = data.get_labels()
    
    gnb = GaussianNB()
    accuracy = kFoldCrossValid(gene_exp,labels,gnb)     
    print(accuracy)

Exemplo n.º 2

Arquivo: baseLine.py Projeto: susanctu/229project

def svmfn(featureSelectionMethod = 'none'):
    data = TCGAData()
    gene_exp = data.get_gene_exp_matrix()
    labels = data.get_labels()
    names = data.get_gene_names()
    clf = svm.SVC(gamma=0.001,C=100.) #these are the values in some random example, idk what C is
    accuracy = kFoldCrossValid(gene_exp,labels,clf,k=4,names=names,selection=featureSelectionMethod)     
    print(accuracy)