Exemplos de get_summary_for_intervalset em Python

Exemplo n.º 1

def transcript_summary_api(transcript_id):
    try:
        intervalset = IntervalSet.from_transcript(get_db(), transcript_id)
        return jsonify(
            lookups.get_summary_for_intervalset(get_db(), intervalset))
    except:
        _err()
        abort(500)

Exemplo n.º 2

def gene_summary_api(gene_id):
    try:
        intervalset = IntervalSet.from_gene(get_db(), gene_id)
        return jsonify(
            lookups.get_summary_for_intervalset(get_db(), intervalset))
    except:
        _err()
        abort(500)

Exemplo n.º 3

def region_summary_api(chrom, start, stop):
    try:
        start, stop = int(start), int(stop)
        assert stop - start <= MAX_REGION_LENGTH
        intervalset = IntervalSet.from_chrom_start_stop(chrom, start, stop)
        return jsonify(
            lookups.get_summary_for_intervalset(get_db(), intervalset))
    except:
        _err()
        abort(500)