def test_build_catalyst_xml_match_example(self):
xml = """
<FindPMIDs>
<Name>
<First>Griffin</First>
<Last>Weber</Last>
</Name>
<EmailList>
<email>[email protected]</email>
</EmailList>
<AffiliationList>
<Affiliation>%Brigham%Women%</Affiliation>
<Affiliation>%@hms.harvard.edu%</Affiliation>
</AffiliationList>
<LocalDuplicateNames>1</LocalDuplicateNames>
<RequireFirstName>false</RequireFirstName>
<MatchThreshold>0.98</MatchThreshold>
<PMIDAddList>
<PMID>11707567</PMID>
</PMIDAddList>
<PMIDExcludeList>
<PMID>19648504</PMID>
</PMIDExcludeList>
</FindPMIDs>
""".strip().replace('\n', '').replace('\t', '').replace(' ', '')
xml = ET.fromstring(xml)
xml = ET.tostring(xml)
actual_xml = catalyst.build_catalyst_xml(
Person('1', 'Griffin', 'Weber', 'Griffin Webber',
'*****@*****.**', '1234567'),
['Brigham%Women', '@hms.harvard.edu'],
['11707567'],
['19648504'])
self.assertEqual(xml, actual_xml)
def get_people(sup_cur: db.Cursor) -> Dict[int, Person]:
print("Gathering People")
people: Dict[int, Person] = {}
records = db.get_people(sup_cur)
for pid, (first, last, display, email, phone, withheld, overview) in records.items():
person = Person(person_id=str(pid),
first_name=first,
last_name=last,
display_name=display,
email=email,
phone=phone,
withheld=withheld,
overview=overview)
people[pid] = person
print(f"There are {len(people)} people.")
return people
def test_build_catalyst_xml_empty_exclude(self):
try:
catalyst.build_catalyst_xml(
Person('1', 'f', 'l', 'd', 'e', 'p'), ['a'], ['1'], [])
except Exception:
self.fail('Empty exclude list caused exception')
def test_build_catalyst_xml_none_exclude(self):
try:
catalyst.build_catalyst_xml(
Person('1', 'f', 'l', 'd', 'e', 'p'), ['a'], ['1'], None)
except Exception:
self.fail('None exclude list caused exception')
def test_build_catalyst_xml_empty_include(self):
with self.assertRaises(AssertionError):
catalyst.build_catalyst_xml(
Person('1', 'f', 'l', 'd', 'e', 'p'), ['a'], [], ['2'])
def test_build_catalyst_xml_none_affiliations(self):
with self.assertRaises(AssertionError):
catalyst.build_catalyst_xml(
Person('1', 'f', 'l', 'd', 'e', 'p'), None, ['1'], ['2'])