def __init__(self, fname):
macrothread.__init__(self, fname, 'anl')
# Analysis Thread State Data
self.setStream('rawoutput', 'completesim')
self.addImmut('anlSplitParam')
self.addImmut('anlDelay')
self.addImmut('centroid')
self.addImmut('numLabels')
self.addImmut('terminate')
self.addImmut('pcaVectors')
self.modules.add('redis')
self.buildArchive = False
self.manual = False
# Update Base Slurm Params
self.slurmParams['cpus-per-task'] = 6
# TODO: Move to Catalog or define on a per-task basis
self.winsize = 100
self.slide = 50
def __init__(self, fname):
macrothread.__init__(self, fname, 'anl')
# Analysis Thread State Data
self.setStream('rawoutput', 'completesim')
self.addImmut('anlSplitParam')
self.addImmut('anlDelay')
self.addImmut('centroid')
self.addImmut('numLabels')
self.addImmut('terminate')
self.addImmut('pcaVectors')
self.modules.add('redis')
self.buildArchive = False
self.manual = False
# Update Base Slurm Params
self.slurmParams['cpus-per-task'] = 6
# TODO: Move to Catalog or define on a per-task basis
self.winsize = 100
self.slide = 50
def __init__(self, fname):
macrothread.__init__(self, fname, 'ctl')
# Set the simluation thread as the down stream macrothread node
self.register_downnode('sim')
# State Data for Simulation MacroThread -- organized by state
self.setStream('basin:stream', None)
self.addMut('jcqueue')
self.addMut('converge')
self.addMut('ctl_index_head')
self.addImmut('basin:list')
self.addImmut('basin:rms')
self.addAppend('timestep')
self.addMut('runtime')
self.addMut('dspace_mu')
self.addMut('dspace_sigma')
self.addMut('raritytheta')
self.addMut('sampler:explore')
self.addMut('basin:processed')
# self.addMut('lattice:max_fis')
# self.addMut('lattice:low_fis')
# self.addMut('lattice:dlat')
# self.addMut('lattice:iset_delta')
self.addMut('ctlCountHead')
self.addImmut('exploit_factor')
self.addImmut('observe:count')
# Update Base Slurm Params
self.slurmParams['cpus-per-task'] = 24
self.modules.add('namd/2.10')
self.trajlist_async = deque()
self.cacheclient = None
# For stat tracking
self.cache_hit = 0
self.cache_miss = 0
# Optimization on global xid list
self.xidreference = None
self.force_decision = False
self.parser.add_argument('--force', action='store_true')
args = self.parser.parse_args()
if args.force:
logging.info('FORCING A MANUAL CONTROL DECISION')
self.force_decision = True
def __init__(self, fname):
macrothread.__init__(self, fname, 'ctl')
# Set the simluation thread as the down stream macrothread node
self.register_downnode('sim')
# State Data for Simulation MacroThread -- organized by state
self.setStream('basin:stream', None)
self.addMut('jcqueue')
self.addMut('converge')
self.addMut('ctl_index_head')
self.addImmut('basin:list')
self.addImmut('basin:rms')
self.addAppend('timestep')
self.addMut('runtime')
self.addMut('dspace_mu')
self.addMut('dspace_sigma')
self.addMut('raritytheta')
self.addMut('sampler:explore')
self.addMut('basin:processed')
# self.addMut('lattice:max_fis')
# self.addMut('lattice:low_fis')
# self.addMut('lattice:dlat')
# self.addMut('lattice:iset_delta')
self.addMut('ctlCountHead')
self.addImmut('exploit_factor')
self.addImmut('observe:count')
# Update Base Slurm Params
self.slurmParams['cpus-per-task'] = 24
self.modules.add('namd/2.10')
self.trajlist_async = deque()
self.cacheclient = None
# For stat tracking
self.cache_hit = 0
self.cache_miss = 0
# Optimization on global xid list
self.xidreference = None
self.force_decision = False
self.parser.add_argument('--force', action='store_true')
args = self.parser.parse_args()
if args.force:
logging.info('FORCING A MANUAL CONTROL DECISION')
self.force_decision = True
def __init__(self, fname, jobnum=None):
macrothread.__init__(self, fname, "sim")
# Set the controller as the down stream macrothread node
self.register_downnode("ctl")
# State Data for Simulation MacroThread -- organized by state
self.setStream("jcqueue", "basin:stream")
self.addAppend("xid:filelist")
# Local Data to this running instance
self.cpu = 1
self.numnodes = 1
# Update Runtime Parameters
self.modules.add("namd/2.10")
# self.modules.add('namd/2.10-mpi')
self.modules.add("redis")
# self.slurmParams['share'] = None
self.slurmParams["cpus-per-task"] = PARALLELISM
# self.slurmParams['time'] = '4-0:00:0'
self.skip_simulation = False
self.skip_timescape = False
self.skip_notify = False
self.parser.add_argument("-a", "--analysis", action="store_true")
self.parser.add_argument("--useid")
self.parser.add_argument("--skiptimescape", action="store_true")
self.parser.add_argument("--skipnotify", action="store_true")
args = self.parser.parse_args()
if args.analysis:
logging.info("SKIPPING SIMULATION")
self.skip_simulation = True
if args.skiptimescape:
logging.info("SKIPPING TIMESCAPE")
self.skip_timescape = True
if args.skipnotify:
logging.info("SKIPPING DOWNSTREAM NOTIFY")
self.skip_notify = True
if args.useid:
self.job_id = args.useid
def __init__(self, fname, jobnum = None):
macrothread.__init__(self, fname, 'sim')
# Set the controller as the down stream macrothread node
self.register_downnode('ctl')
# State Data for Simulation MacroThread -- organized by state
self.setStream('jcqueue', 'basin:stream')
self.addAppend('xid:filelist')
# Local Data to this running instance
self.cpu = 1
self.numnodes = 1
# Update Runtime Parameters
self.modules.add('namd/2.10')
# self.modules.add('namd/2.10-mpi')
self.modules.add('redis')
# self.slurmParams['share'] = None
self.slurmParams['cpus-per-task'] = PARALLELISM
# self.slurmParams['time'] = '4-0:00:0'
self.skip_simulation = False
self.skip_timescape = False
self.skip_notify = False
self.parser.add_argument('-a', '--analysis', action='store_true')
self.parser.add_argument('--useid')
self.parser.add_argument('--skiptimescape', action='store_true')
self.parser.add_argument('--skipnotify', action='store_true')
args = self.parser.parse_args()
if args.analysis:
logging.info('SKIPPING SIMULATION')
self.skip_simulation = True
if args.skiptimescape:
logging.info('SKIPPING TIMESCAPE')
self.skip_timescape = True
if args.skipnotify:
logging.info('SKIPPING DOWNSTREAM NOTIFY')
self.skip_notify = True
if args.useid:
self.job_id = args.useid
def __init__(self, fname):
macrothread.__init__(self, fname, 'ctl')
# State Data for Simulation MacroThread -- organized by state
self.setStream('completesim', None)
self.addMut('jcqueue')
self.addMut('converge')
self.addMut('ctlIndexHead')
self.addMut('ctlCountHead')
self.addImmut('ctlSplitParam')
self.addImmut('ctlDelay')
self.addImmut('numLabels')
self.addImmut('terminate')
self.addImmut('numresources')
self.addImmut('ctlBatchSize_min')
self.addImmut('ctlBatchSize_max')
self.addImmut('dcdfreq')
self.addImmut('runtime')
self.addImmut('exploit_factor')
self.addImmut('max_observations')
self.addImmut('sim_step_size')
self.addImmut('observe:count')
self.addAppend('timestep')
# self.addAppend('observe')
self.addMut('runtime')
# Update Base Slurm Params
self.slurmParams['cpus-per-task'] = 24
self.modules.add('namd/2.10')
self.trajlist_async = deque()
self.cacheclient = None
# For stat tracking
self.cache_hit = 0
self.cache_miss = 0
# Optimization on global xid list
self.xidreference = None
def __init__(self, fname, jobnum = None):
macrothread.__init__(self, fname, 'sim')
# State Data for Simulation MacroThread -- organized by state
self.setStream('jcqueue', 'completesim')
self.addImmut('simSplitParam')
self.addImmut('simDelay')
self.addImmut('centroid')
self.addImmut('numLabels')
self.addImmut('terminate')
self.addImmut('sim_conf_template')
self.addImmut('dcdfreq')
self.addImmut('runtime')
self.addImmut('obs_noise')
self.addImmut('sim_step_size')
self.addImmut('max_observations')
self.addAppend('xid:filelist')
# Local Data to this running instance
self.cpu = 1
self.numnodes = 1
# Update Runtime Parameters
self.modules.add('namd/2.10')
# self.modules.add('namd/2.10-mpi')
self.modules.add('redis')
# self.slurmParams['share'] = None
self.slurmParams['cpus-per-task'] = PARALLELISM
# self.slurmParams['time'] = '2:00:0'
self.skip_simulation = False
self.parser.add_argument('-a', '--analysis', action='store_true')
self.parser.add_argument('--useid')
args = self.parser.parse_args()
if args.analysis:
logging.info('SKIPPING SIMULATION')
self.skip_simulation = True
if args.useid:
self.job_id = args.useid
def __init__(self, fname, jobnum = None):
macrothread.__init__(self, fname, 'sim')
# State Data for Simulation MacroThread -- organized by state
self.setStream('jcqueue', 'rawoutput')
self.addImmut('simSplitParam')
self.addImmut('simDelay')
self.addImmut('terminate')
self.addImmut('sim_conf_template')
self.addAppend('launch')
# Local Data to this running instance
self.cpu = 1
self.numnodes = 1
# Update Runtime Parameters
self.modules.add('namd/2.10')
self.modules.add('redis')
# self.slurmParams['share'] = None
self.slurmParams['cpus-per-task'] = PARALLELISM
self.slurmParams['time'] = '4:00:0'
