cursor = db.cursor() hostname = dbConn.getHostname() root_path = dbConn.getRootDir() dnaHandler = DNAHandler(db, cursor) protHandler = ProteinHandler(db, cursor) rHandler = ReagentHandler(db, cursor) oHandler = OligoHandler(db, cursor) propHandler = ReagentPropertyHandler(db, cursor) packetHandler = ProjectDatabaseHandler(db, cursor) propMapper = ReagentPropertyMapper(db, cursor) prop_Name_ID_Map = propMapper.mapPropNameID() # (prop name, prop id) prop_Category_Name_ID_Map = propMapper.mapPropCategoryNameID() # currUser is an INT user ID def getCurrentUserProjects(currUser): #print "Content-type:text/html" #print # get projects user has AT LEAST Read access to (i.e. if he is explicitly declared a Writer on a project but not declared a Reader, that's allowed) currReadProj = packetHandler.findMemberProjects(currUser, 'Reader') currWriteProj = packetHandler.findMemberProjects(currUser, 'Writer') publicProj = packetHandler.findAllProjects(isPrivate="FALSE") # list of Packet OBJECTS currUserWriteProjects = utils.unique(currReadProj + currWriteProj + publicProj)
# Various maps
reagentType_Name_ID_Map = rMapper.mapTypeNameID()
reagentType_ID_Name_Map = rMapper.mapTypeIDName()
assoc_Type_Name_Map = aMapper.mapAssocTypeNameID()
assoc_Name_Alias_Map = aMapper.mapAssocNameAlias()
assoc_Name_Type_Map = aMapper.mapAssocTypeNameID()
prop_Name_ID_Map = propMapper.mapPropNameID() # (prop name, prop id)
prop_ID_Name_Map = propMapper.mapPropIDName() # (prop id, prop name)
prop_Name_Alias_Map = propMapper.mapPropNameAlias() # (propName, propAlias)
prop_Alias_Name_Map = propMapper.mapPropAliasName() # (propAlias, propName)
prop_Alias_ID_Map = propMapper.mapPropAliasID() # (propAlias, propID) - e.g. ('insert_type', '48')
prop_Category_Name_ID_Map = propMapper.mapPropCategoryNameID()
featureNameColorMap = propMapper.mapFeatureNameColor()
#print `featureNameColorMap`
# Get enzymes list for mapping sequence features
enzDict = utils.join(sHandler.sitesDict, sHandler.gatewayDict)
enzDict = utils.join(enzDict, sHandler.recombDict) # add LoxP
enzDict['None'] = "" # add 'None'
# currUser is an INT user ID
def getCurrentUserProjects(currUser):
#print "Content-type:text/html"
#print
