def _bp_all_timepoints(time_dfs, bp_positions, feat, colors):
"""
Plot progression score distributions per time point as boxplots.
:param time_dfs: Dictionary storing the calculated progression scores per time point.
:param bp_positions: List storing the boxplot positions
:param feat: Feature name for which plot shall be created.
:param colors: Iterable storing the colors that shall be used for visualizing. One color per dataset in the \
DataCollection.
:return:
"""
timepoints = list(time_dfs.keys())
timepoints.sort()
for time, bp_time_pos in zip(timepoints, bp_positions):
# prepare data for plotting: extract feature data and exclude NaN's and inf's
time_data = [timepoint[feat].replace(np.inf, np.nan).dropna() for timepoint in time_dfs[time]]
# create boxplots, i iterates over the number of different datasets
for i in range(len(time_data)):
# check and skip dataset for current time point if no data is available
if len(time_data[i]) > 1:
# create boxplot at specific position
bp = plt.boxplot(time_data[i], positions=[bp_time_pos[i]], patch_artist=True, widths=0.6)
# change boxplot outline colors
for bp_part in ['boxes', 'whiskers', 'fliers', 'caps']:
for element in bp[bp_part]:
plt.setp(element, color=colors[i])
else:
continue
def boxplot(data, x, y, figsize=(10, 8), xticklabels=None,
savefile=None, box_quantiles=None, notch=False):
fig, ax = plt.subplots(1)
whis = (1, 99) if box_quantiles is not None else 1.5
sns.boxplot(x=x, y=y, data=data, notch=notch,
linewidth=2, width=0.4, whis=whis)
prettify(figsize)
for i, artist in enumerate(ax.artists):
# Set the linecolor on the artist to the facecolor, and set the facecolor to None
# col = artist.get_facecolor()
col = (0.0, 0.0, 0.0)
artist.set_edgecolor((0.0, 0.0, 0.0))
artist.set_facecolor('None')
# Each box has 6 associated Line2D objects (to make the whiskers, fliers, etc.)
# Loop over them here, and use the same colour as above
for j in range(i * 6, i * 6 + 6):
line = ax.lines[j]
line.set_color(col)
line.set_mfc(col)
line.set_mec(col)
plt.xlabel('')
if xticklabels is not None:
ax.set_xticklabels(xticklabels)
plt.setp(ax.get_xticklabels(), rotation=0, horizontalalignment='center')
if savefile is not None:
plt.savefig(savefile, format='eps', bbox_inches='tight')
def pie(codes,pounds,filename):
plt.xlabel("Date")
plt.ylabel("Pound")
fig = plt.figure(facecolor='white')
ax = fig.add_axes([0.05, 0.0, 0.80, 0.94])
# Set graph label size
matplotlib.rcParams['font.size'] = 7
# Generate pie chart
patches, texts, autotexts = ax.pie(pounds,labels=codes, autopct='%1.1f%%')
# Don't show percentages on pie chart
proptease = fm.FontProperties()
proptease.set_size('0')
plt.setp(autotexts, fontproperties=proptease)
# Set graph size
F = pylab.gcf()
DefaultSize = F.get_size_inches()
F.set_size_inches( (DefaultSize[0]*0.7, DefaultSize[1]*0.7) )
# Save graph
plt.savefig(filename)
plt.close()
def plot_std_meshlines(self, step=0.1):
'''
plot mesh circles for stdv
'''
color = self.std_color
nstdmax = self.stdmax
if self.negative:
axmin = -np.pi / 2.
else:
axmin = 0.
th = np.arange(axmin, np.pi / 2, 0.01)
for ra in np.arange(0, nstdmax + 0.1 * step, step):
self.ax.plot(ra * np.sin(th), ra * np.cos(th), ':', color=color)
if self.normalize:
self.ax.set_ylabel('$\sigma / \sigma_{obs}$', color=color)
self.ax.set_xlabel('$\sigma / \sigma_{obs}$', color=color)
else:
self.ax.set_ylabel('Standard Deviation', color=color)
self.ax.set_xlabel('Standard Deviation', color=color)
xticklabels = plt.getp(plt.gca(), 'xticklabels')
plt.setp(xticklabels, color=color)
yticklabels = plt.getp(plt.gca(), 'yticklabels')
plt.setp(yticklabels, color=color)
def plot_std_meshlines(self, step=0.1):
'''
plot mesh circles for stdv
'''
color = self.std_color
nstdmax = self.stdmax
if self.negative:
axmin = -np.pi / 2.
else:
axmin = 0.
th = np.arange(axmin, np.pi / 2, 0.01)
for ra in np.arange(0, nstdmax + 0.1 * step, step):
self.ax.plot(ra * np.sin(th), ra * np.cos(th), ':', color=color)
if self.normalize:
self.ax.set_ylabel('$\sigma / \sigma_{obs}$', color=color)
self.ax.set_xlabel('$\sigma / \sigma_{obs}$', color=color)
else:
self.ax.set_ylabel('Standard Deviation', color=color)
self.ax.set_xlabel('Standard Deviation', color=color)
xticklabels = plt.getp(plt.gca(), 'xticklabels')
plt.setp(xticklabels, color=color)
yticklabels = plt.getp(plt.gca(), 'yticklabels')
plt.setp(yticklabels, color=color)
def plot_correlation(self, metric=None):
"""
Make a correlation plot. Shows you the correlation between all the word embeddings. Can
also be configured to show distances instead.
Arguments:
metric: don't plot correlation but a distance measure, must be scipy compatible (cosine, euclidean, etc)
Usage:
```python
from whatlies.language import SpacyLanguage
lang = SpacyLanguage("en_core_web_md")
names = ['red', 'blue', 'green', 'yellow', 'cat', 'dog', 'mouse', 'rat', 'bike', 'car']
emb = lang[names]
emb.plot_correlation()
```
"""
df = self.to_dataframe().T
corr_df = (
pairwise_distances(self.to_matrix(), metric=metric) if metric else df.corr()
)
fig, ax = plt.subplots()
plt.imshow(corr_df)
plt.xticks(range(len(df.columns)), df.columns)
plt.yticks(range(len(df.columns)), df.columns)
plt.colorbar()
# Rotate the tick labels and set their alignment.
plt.setp(ax.get_xticklabels(), rotation=90, ha="right", rotation_mode="anchor")
plt.show()
def caculate_distance_threshold(distance_list):
distance_list.sort()
# 画平滑前的密度序列图（未归一化）
pl.figure(figsize=Utility.figure_size)
l = pl.plot(distance_list, 'og')
pl.setp(l, markersize=3)
pl.xlabel('sequence')
pl.ylabel('density')
pl.show()
max_potential = max(distance_list)
kernel = Utility.generate_gaus_kernel(4)
smoothed_potential_list = Utility.calculate_conv(distance_list, kernel)
# 画平滑后的密度序列图
pl.figure(figsize=Utility.figure_size)
l2 = pl.plot(smoothed_potential_list, 'og')
pl.setp(l2, markersize=3)
pl.xlabel('sequence')
pl.ylabel('density')
pl.show()
curvature_index = Utility.calculate_curvature3(smoothed_potential_list,
True)
if curvature_index > 0:
threshold_candid = smoothed_potential_list[curvature_index]
if max_potential / threshold_candid > 2:
print '*' * 30
print max_potential
print threshold_candid
print '*' * 30
threshold_candid = max_potential / math.sqrt(2)
threshold = threshold_candid
return threshold
else:
return -1
def test2():
mu = 10.0
sigma = 2.0
x = Variable("x", float)
loggauss = -0.5 * math.log(2.0 * math.pi * sigma * sigma) - 0.5 * (
(x - mu)**2) / (sigma * sigma)
f = Function(name="foo", params=(x, ), rettype=float, expr=loggauss)
engine = create_execution_engine()
module = f.compile(engine)
func_ptr = engine.get_pointer_to_function(module.get_function("foo"))
samples = metropolis_hastings(func_ptr, sigma, 0.0, 1000, 2)
#plt.plot(np.arange(len(samples)), samples)
n, bins, patches = plt.hist(samples[500:],
25,
normed=1,
histtype='stepfilled')
plt.setp(patches, 'facecolor', 'g', 'alpha', 0.75)
# add a line showing the expected distribution
y = plt.normpdf(bins, mu, sigma)
l = plt.plot(bins, y, 'k--', linewidth=1.5)
plt.show()
def __init__(self, ax, collection, mmc, img):
self.colornormalizer = Normalize(vmin=0, vmax=1, clip=False)
self.scat = plt.scatter(img[:, 0], img[:, 1], c=mmc.classvec)
plt.gray()
plt.setp(ax.get_yticklabels(), visible=False)
ax.yaxis.set_tick_params(size=0)
plt.setp(ax.get_xticklabels(), visible=False)
ax.xaxis.set_tick_params(size=0)
self.img = img
self.canvas = ax.figure.canvas
self.collection = collection
#self.alpha_other = alpha_other
self.mmc = mmc
self.prevnewclazz = None
self.xys = collection
self.Npts = len(self.xys)
self.lockedset = set([])
self.lasso = LassoSelector(ax, onselect=self.onselect)#, lineprops = {:'prism'})
self.lasso.disconnect_events()
self.lasso.connect_event('button_press_event', self.lasso.onpress)
self.lasso.connect_event('button_release_event', self.onrelease)
self.lasso.connect_event('motion_notify_event', self.lasso.onmove)
self.lasso.connect_event('draw_event', self.lasso.update_background)
self.lasso.connect_event('key_press_event', self.onkeypressed)
#self.lasso.connect_event('button_release_event', self.onrelease)
self.ind = []
self.slider_axis = plt.axes(slider_coords, visible = False)
self.slider_axis2 = plt.axes(obj_fun_display_coords, visible = False)
self.in_selection_slider = None
newws = list(set(range(len(self.collection))) - self.lockedset)
self.mmc.new_working_set(newws)
self.lasso.line.set_visible(False)
def plot_gauss(no):
seq = 1
if no==1:
n = str(no)
n = n.zfill(3)
imtype ='IIM'+n
elif no<1000:
n = str(no)
n = n.zfill(3)
imtype = 'IIM'+n
else:
imtype = 'II'+str(no)
print 'doing '+imtype
testImg = WAIPSImage('J0528+2200', imtype, 1, seq,43)
dat = testImg.pixels.flatten()
end_1, end_2 = np.array([dat.size*0.1,dat.size*0.9],dtype=int)
mu=np.mean(dat[end_1:end_2])
sigma=stats.tstd(dat[end_1:end_2])
peak = np.max(dat)
print 'peak:', np.max(dat), 'rms: ', sigma, 'snr: ', peak/sigma
plt.figure()
n,bins,patches = plt.hist(dat,100,normed=1,histtype='stepfilled')
plt.setp(patches,'facecolor','g','alpha',0.75)
y = plt.normpdf(bins,mu,sigma)
plt.plot(bins,y,'k--',linewidth=1.5)
plt.show()
def plot_datetime_histogram(times,
step,
strftime_formatter="%H:%M",
density=False,
normalizer=1,
title="",
show=True):
"""
Plot an histogram of a sequence of datetime.datetime objects
Parameters
----------
times: list of datetime.datetime objects, non-optional
List of values on which the histogram is going to be calculates
step: int, non-optional
Step of time on wich the histogram is going to be divided.
strftime_formatter: string, optional. Default:'%H:%M'
Formatter used to show the time in the x-axes, on default shows time as HH:MM
densitity: boolean, optional. Default False.
If the histogram should be normalized or not."""
def lower_p(a, p):
return p * math.floor(a / p)
times.sort()
t_min, t_max = times[0], times[-1]
r1, r2 = lower_p(t_min.minute, step), lower_p(t_max.minute, step)
t_min, t_max = (
t_min.replace(minute=r1, second=0, microsecond=0),
t_max.replace(minute=r2, second=0, microsecond=0) +
dt.timedelta(minutes=step),
)
t_min, t_max = t_min.timestamp(), t_max.timestamp()
times = list(map(lambda date: date.timestamp(), times))
bins = np.arange(start=t_min, stop=t_max, step=(step * 60))
counts, _ = np.histogram(times, bins=bins, density=density)
counts = counts / normalizer
fig, ax = plt.subplots(figsize=(10, 6.5))
ax.bar((bins[:-1] + (60 * step) / 2),
counts,
step * 60,
color="salmon",
edgecolor="black",
linewidth="2")
ax.set_xticks(bins)
_xticks = [dt.datetime.fromtimestamp(stamp) for stamp in bins]
_xticks = [date.strftime(strftime_formatter) for date in _xticks]
ax.set_xticklabels(_xticks)
plt.setp(ax.get_xticklabels(),
rotation=45,
ha="right",
rotation_mode="anchor")
ax.set_title(title)
ax.grid("on")
fig.tight_layout()
if show: plt.show()
return
def interev_mag(times, mags):
r"""Function to plot interevent times against magnitude for given times
and magnitudes.
:type times: list of datetime
:param times: list of the detection times, must be sorted the same as mags
:type mags: list of float
:param mags: list of magnitudes
"""
l = [(times[i], mags[i]) for i in xrange(len(times))]
l.sort(key=lambda tup: tup[0])
times = [x[0] for x in l]
mags = [x[1] for x in l]
# Make two subplots next to each other of time before and time after
fig, axes = plt.subplots(1, 2, sharey=True)
axes = axes.ravel()
pre_times = []
post_times = []
for i in range(len(times)):
if i > 0:
pre_times.append((times[i] - times[i - 1]) / 60)
if i < len(times) - 1:
post_times.append((times[i + 1] - times[i]) / 60)
axes[0].scatter(pre_times, mags[1:])
axes[0].set_title('Pre-event times')
axes[0].set_ylabel('Magnitude')
axes[0].set_xlabel('Time (Minutes)')
plt.setp(axes[0].xaxis.get_majorticklabels(), rotation=30)
axes[1].scatter(pre_times, mags[:-1])
axes[1].set_title('Post-event times')
axes[1].set_xlabel('Time (Minutes)')
plt.setp(axes[1].xaxis.get_majorticklabels(), rotation=30)
plt.show()
def render_21_output(
ax, fig, y_out, M=100, y0range=[-1, 1], y1range=[-1, 1], cmap=None,
):
img = ax.imshow(
np.reshape(y_out, [M, M]),
origin='lower',
extent=[y0range[0], y0range[1], y1range[0], y1range[1]],
cmap=cmap,
)
ax.set_xlabel(r'$y_1$')
ax.set_ylabel(r'$y_2$')
axins1 = inset_axes(
ax,
width="40%", # width = 50% of parent_bbox width
height="5%", # height : 5%
loc='upper right',
)
imgmin = np.min(y_out)
imgmax = np.max(y_out)
color_bar = fig.colorbar(
img,
cax=axins1,
orientation="horizontal",
ticks=np.linspace(imgmin, imgmax, 3),
)
cbxtick_obj = plt.getp(color_bar.ax.axes, 'xticklabels')
plt.setp(cbxtick_obj, color="white")
axins1.xaxis.set_ticks_position("bottom")
def plot_spectra(self,
ax=None,
glat=0,
glon=(0, 2, -2, 30, -30, 90, -90),
erange=None,
title=None,
label=None):
""" show spectral for give glat, various glon values """
from matplotlib import pylab as plt
if not self.loaded: self.load()
ee = np.logspace(1.5, 6, 101) if erange is None else erange
if ax is None:
fig, ax = plt.subplots(1, 1, figsize=(5, 5))
else:
fig = ax.figure
for x in glon:
sd = skymaps.SkyDir(glat, x, skymaps.SkyDir.GALACTIC)
ax.loglog(ee,
map(lambda e: e**2 * self(sd, e), ee),
label='b=%.0f' % x if label is None else label)
# if hasattr(self, 'energies'):
# et = self.energies
# ax.loglog(et, map(lambda e: e**2*self(sd,e), et), '--')
ax.grid()
if len(glon) > 1:
ax.legend(loc='lower left', prop=dict(size=10))
plt.setp(
ax,
xlabel=r'$\mathrm{Energy\ [MeV]}$',
ylabel=r'$\mathrm{E^2\ df/dE\ [Mev\ cm^{-2}\ s^{-1}\ sr^{-1}]}$')
ax.set_title('Galactic diffuse at l=%.0f' %
glat if title is None else title,
size=12)
return fig
def snIaspec_with_medbands(z = 1.2):
""" plot a SNIa spectrum at the given z, overlaid with medium bands
matching the SN Camille obs set.
:param z:
:return:
"""
import stardust
from demofig import w763,f763,w845,f845,w139,f139
w1a, f1a = stardust.snsed.getsed( sedfile='/usr/local/SNDATA_ROOT/snsed/Hsiao07.dat', day=0 )
w1az = w1a * (1+z)
f1az = f1a / f1a.max() / 2.
ax18 = pl.gca() # subplot(3,2,1)
ax18.plot(w1az, f1az, ls='-', lw=0.7, color='0.5', label='_nolegend_')
ax18.plot(w763, f763, ls='-', color='DarkOrchid',label='F763M')
ax18.plot(w845, f845, ls='-',color='Teal', label='F845M')
ax18.plot(w139, f139, ls='-',color='Maroon', label='F139M')
#ax18.fill_between( w1az, np.where(f763>0.01,f1az,0), color='DarkOrchid', alpha=0.3 )
#ax18.fill_between( w1az, f1az, where=((w1az>13500) & (w1az<14150)), color='teal', alpha=0.3 )
#ax18.fill_between( w1az, f1az, where=((w1az>15000) & (w1az<15700)), color='Maroon', alpha=0.3 )
ax18.text(0.95,0.4, 'SNIa\n@ z=%.1f'%(z), color='k',ha='right',va='bottom',fontweight='bold', transform=ax18.transAxes, fontsize='large')
ax18.set_xlim( 6500, 16000 )
pl.setp(ax18.get_xticklabels(), visible=False)
pl.setp(ax18.get_yticklabels(), visible=False)
ax18.text( 7630, 0.65, 'F763M', ha='right', va='center', color='DarkOrchid', fontweight='bold')
ax18.text( 8450, 0.65, 'F845M', ha='center', va='center', color='Teal', fontweight='bold')
ax18.text( 13900, 0.65, 'F139M', ha='left', va='center', color='Maroon', fontweight='bold')
def plot_flexure(flexfile, plotdir):
import matplotlib.dates as md
xfmt = md.DateFormatter('%d %b %H h')
flexure = np.genfromtxt(flexfile, dtype=None, delimiter=",")
dateflex = []
for fl in flexure:
#Format of the file: ifu20160630_00_08_38
t = datetime.datetime.strptime(fl["f1"], 'ifu%Y%m%d_%H_%M_%S.pos')
dateflex.append(t)
plt.plot(dateflex, flexure["f2"], "o-")
plt.xlabel("Date")
plt.ylabel("Median (flexure) [pixels]")
plt.gca().xaxis.set_major_formatter(xfmt)
labels = plt.gca().get_xticklabels()
plt.setp(labels, rotation=30, fontsize=10)
curdate = datetime.datetime.strftime(dateflex[-1], "%Y%m%d")
plt.savefig(os.path.join(plotdir, "flexure_%s.png" % curdate),
bbox_inches='tight')
plt.clf()
def _set_legend(self):
legend = plt.legend(loc=1, fontsize=12, fancybox=True, shadow=True)
frame = legend.get_frame()
legend.set_frame_on(True)
frame.set_facecolor('white')
plt.setp(legend.get_title(), fontsize=12)
def plotStuff(data, labels, title):
fig, ax = plt.subplots()
im = ax.imshow(data)
# We want to show all ticks...
ax.set_xticks(np.arange(len(labels)))
ax.set_yticks(np.arange(len(labels)))
# ... and label them with the respective list entries
ax.set_xticklabels(labels, size=14)
ax.set_yticklabels(labels, size=14)
# Rotate the tick labels and set their alignment.
plt.setp(ax.get_xticklabels(),
rotation=45,
ha="right",
rotation_mode="anchor")
# Loop over data dimensions and create text annotations.
for i in range(len(labels)):
for j in range(len(labels)):
text = ax.text(j,
i,
data[i, j],
ha="center",
va="center",
color="dimgrey",
size=14)
ax.set_title(title, size=14)
fig.tight_layout()
plt.show()
return ()
def plot_ti_auc(fs, betas, name="", lower_bound=True):
# colors = cm.rainbow(np.linspace(0, 1, len(betas)))
colors = cm.viridis(np.linspace(0, 1, len(betas)))
fig, ax = plt.subplots(figsize=(6, 3))
patches = ax.bar(betas[:-1],
fs,
width=betas[1:] - betas[:-1],
align="edge")
for i in range(len(betas) - 1):
patches[i].set_facecolor(colors[i])
if lower_bound:
text = r"$\sum_k F_k = {:.2f}$".format(np.sum(fs))
ylabel = r"$F_{k}$"
else:
text = r"$\sum_k \tilde{{F}}_k = {:.2f}$".format(np.sum(fs))
ylabel = r"$\tilde{{F}}_{k}$"
text_box = AnchoredText(
text,
frameon=False,
loc=4,
pad=0,
prop={"size": 12},
)
plt.setp(text_box.patch, facecolor="white", alpha=0.5)
plt.gca().add_artist(text_box)
plt.xlabel(r"$\beta$")
plt.ylabel(ylabel)
plt.savefig("/tmp/{}.pdf".format(name), bbox_inches="tight", pad_inches=0)
def startAnim(x, m, th, Tsim, inter=1, Tstart=0, h=0.002):
# fig, axM = subplo1ts()
# axX = axM.twinx()
fig = figure()
axM = subplot(211)
axX = subplot(212, sharex=axM)
anim = MyAnim(x, m, th, Tsim, inter, Tstart/h, h)
anim.line1, = axM.plot([], [], 'b')
anim.line2, = axX.plot([], [], 'g')
setp(axM.get_xticklabels(), visible=False)
axM.set_xlim([-pi, pi])
axX.set_xlim([-pi, pi])
# axM.set_ylim([0., 3])
# axX.set_ylim([0., 1.])
axM.set_ylim([amin(m), amax(m)])
axX.set_ylim([amin(x), amax(x)])
axM.set_ylabel(r"$m$")
axX.set_ylabel(r"$x$")
axX.set_xlabel(r"$\theta$")
hold(False)
for tl in axM.get_yticklabels():
tl.set_color('b')
for tl in axX.get_yticklabels():
tl.set_color('g')
anim.axM = axM
anim.axX = axX
fig.canvas.mpl_connect('button_press_event', anim.onClick)
a = FuncAnimation(fig, anim, frames=anim.dataGen, init_func=anim.init,
interval=0, blit=True, repeat=True)
show()
return a
def spy(A, linespec='b.', tol=1e-4, Xm=None, Ym=None, ax=None):
"""Return figure showing which elements in array are non-zero"""
#import pdb
A = np.asarray(A)
ax = ax if not ax == None else plt.gca()
if len(A.shape) != 2:
raise err.InputError("", "Iinput array must be 2D")
Ny, Nx = A.shape
if Xm == None:
Xm = (np.arange(0, A.shape[1]) + 0.5).reshape(1, Nx) * np.ones((Ny, 1))
else:
if not np.all(A.shape == Xm.shape):
raise err.InputError(
"", "shape of input array must match shape of Xm")
if Ym == None:
Ym = (np.arange(0, Ny) + 0.5)[::-1].reshape(Ny, 1) * np.ones((1, Nx))
else:
if not np.all(A.shape == Ym.shape):
raise err.InputError("",
"shape of input aray must match shape of Ym")
#pdb.set_trace()
I = np.logical_not(np.logical_and(A > -tol, A < tol))
plt.setp(ax, 'xlim', (Xm[0, 0], Xm[0, -1]), 'ylim', (Ym[-1, 0], Ym[0, 0]))
plt.plot(Xm[I], Ym[I], linespec)
def PlotConnectivityProperties(self):
#self._AverageConnectivity.append(nx.average_node_connectivity(self._Network))
plt.figure(self._FigureNumber)
self._FigureNumber += 1
plt.subplot(131)
self._DegreeDistribution = sorted(nx.degree(self._Network).values(),reverse=True)
p=plt.loglog(self._DegreeDistribution,'-',marker='o')
plt.setp(p,color='darkblue')
plt.title("Degree rank plot")
plt.ylabel("degree")
plt.xlabel("rank")
plt.subplot(132)
plt.hist([n._SynapseCount for n in self._Neurons], 20,facecolor='lightblue', alpha=0.75, edgecolor='darkblue')
plt.title('Distribution of number of synapses formed')
plt.xlabel('Number of synapses')
plt.ylabel('Count')
plt.xlim( (0, 1200) )
plt.subplot(133)
weights = [self._Network.get_edge_data(n1,n2,default=0)['weight'] for n1,n2 in self._Network.edges()]
plt.hist(weights, 20, facecolor='lightblue', alpha=0.75, edgecolor='darkblue')
plt.title('Distribution of edge weights')
plt.xlabel('Edge weight')
plt.ylabel('Count')
plt.xlim( (0, 1200) )
def plot(self,file):
cds = CaseDataset(file, 'bson')
data = cds.data.driver('driver').by_variable().fetch()
cds2 = CaseDataset('../output/therm_mc_20141110173851.bson', 'bson')
data2 = cds2.data.driver('driver').by_variable().fetch()
#temp
temp_boundary_k = data['hyperloop.temp_boundary']
temp_boundary_k.extend(data2['hyperloop.temp_boundary'])
temp_boundary = [((x-273.15)*1.8 + 32) for x in temp_boundary_k]
#histogram
n, bins, patches = plt.hist(temp_boundary, 100, normed=1, histtype='stepfilled')
plt.setp(patches, 'facecolor', 'b', 'alpha', 0.75)
#stats
mean = np.average(temp_boundary)
std = np.std(temp_boundary)
percentile = np.percentile(temp_boundary,99.5)
print "mean: ", mean, " std: ", std, " 99.5percentile: ", percentile
x = np.linspace(50,170,150)
plt.plot(x,mlab.normpdf(x,mean,std), color='black', lw=2)
plt.xlim([60,160])
plt.ylabel('Probability', fontsize=18)
plt.xlabel(u'Equilibrium Temperature, \N{DEGREE SIGN}F', fontsize=18)
#plt.show()
plt.tight_layout()
plt.savefig('../output/histo.pdf', dpi=300)
def axis_settings(subax, info_dict, label=False, region=None):
subax.set_xlim((-0.5, 3.5))
subax.set_ylim((-10, 30))
subax.set_xticks([0, 1, 2, 3])
subax.set_xticklabels([
state + '\n' + str(info_dict[state]['excee']) + '-days'
for state in ['warm', 'dry', 'dry-warm', '5mm']
])
if region == 'mid-lat':
subax.set_ylabel('rel. change in\nExceedence probability [%]',
fontsize=10)
subax.tick_params(axis='x',
labelsize=9,
colors='k',
size=1,
rotation=90)
subax.tick_params(axis='y', labelsize=10, colors='k', size=1)
subax.yaxis.get_label().set_backgroundcolor('w')
bbox = dict(boxstyle="round", ec="w", fc="w", alpha=1)
plt.setp(subax.get_yticklabels(), bbox=bbox)
else:
subax.set_yticklabels([])
subax.set_xticklabels([])
subax.locator_params(axis='y', nbins=5)
subax.grid(True, which="both", ls="--", c='gray', lw=0.35)
subax.axhline(y=0, c='gray')
return (subax)
def Build_Type_Graphs(Tweet_Type_Per_File_Dict,File_Name_Map):
# Calculate Distribution from dict:
import pandas as pd
Agg_Type_df = pd.DataFrame(Tweet_Type_Per_File_Dict)
Agg_Type_df = Agg_Type_df.rename({0:'Monologue', 1:'Reply', 2:'Quote', 3:'Mix'},axis=0)
Agg_Type_df = Agg_Type_df.rename(File_Name_Map,axis=1)
Agg_Type_Pct_df = Agg_Type_df.apply(lambda x: x/x.sum(), axis=0)
import seaborn as sns
sns.set(style="ticks", palette="pastel")
data = []
for row in Agg_Type_Pct_df.iterrows():
ttype = row[0]
user = [x for x in row[1].index]
pct = [x for x in row[1].array]
for n in range(0,len(row[1])):
data.append((user[n], ttype, pct[n]))
flat_df = pd.DataFrame(data, columns=['User', 'Tweet Type', 'Percentage'])
import matplotlib as plt
import matplotlib.pylab as pyl
plt.rc('ytick', labelsize=5.5)
plt.rc('ytick', labelsize=5.5)
ax = sns.scatterplot(data=flat_df, x="Percentage", y="User", hue="Tweet Type")
ax.set_aspect(aspect=0.04)
pyl.setp(ax.get_legend().get_texts(), fontsize='6') # for legend text
pyl.setp(ax.get_legend().get_title(), fontsize='8') # for legend title
pyl.savefig('Tweet Pcts.png')
return(0)
def plot_cm_results(freqs, locs, train_histories, note=''):
acc_matrix = np.array([entry[1][1]
for scn, entry in train_histories]).reshape((3, 3))
fig, ax = plt.subplots()
im = ax.imshow(acc_matrix, vmin=0, vmax=1)
# We want to show all ticks...
ax.set_xticks(np.arange(len(freqs)))
ax.set_yticks(np.arange(len(locs)))
# ... and label them with the respective list entries
ax.set_xticklabels(freqs, size=18)
ax.set_yticklabels(locs, size=18)
# Rotate the tick labels and set their alignment.
plt.setp(ax.get_xticklabels(),
rotation=45,
ha="right",
rotation_mode="anchor")
# Loop over data dimensions and create text annotations.
for i in range(len(locs)):
for j in range(len(freqs)):
text = ax.text(j,
i,
round(acc_matrix[i, j], 3),
ha="center",
va="center",
color="black",
size=20)
ax.set_title("Three motion classification accuracies " + note, size=15)
# fig.tight_layout()
plt.show()
def plot_mnist(X, y, X_embedded, name, min_dist=10.0):
fig = plt.figure(figsize=(10, 10))
ax = plt.axes(frameon=False)
plt.title("\\textbf{MNIST dataset} -- Two-dimensional "
"embedding of 70,000 handwritten digits with %s" % name)
plt.setp(ax, xticks=(), yticks=())
plt.subplots_adjust(left=0.0, bottom=0.0, right=1.0, top=0.9,
wspace=0.0, hspace=0.0)
plt.scatter(X_embedded[:, 0], X_embedded[:, 1],
c=y, marker="x")
if min_dist is not None:
from matplotlib import offsetbox
shown_images = np.array([[15., 15.]])
indices = np.arange(X_embedded.shape[0])
np.random.shuffle(indices)
for i in indices[:5000]:
dist = np.sum((X_embedded[i] - shown_images) ** 2, 1)
if np.min(dist) < min_dist:
continue
shown_images = np.r_[shown_images, [X_embedded[i]]]
imagebox = offsetbox.AnnotationBbox(
offsetbox.OffsetImage(X[i].reshape(28, 28),
cmap=plt.cm.gray_r), X_embedded[i])
ax.add_artist(imagebox)
def OnButtonTidyButton(self, event):
# for easy coding
T = self.TreeCtrlMain
s = T.GetSelection()
f = self.GetTreeItemData(s, "figure")
w = self.GetTreeItemData(s, "window")
# set the current figure
pylab.figure(f.number)
# first set the size of the window
w.SetSize([500,500])
# now loop over all the data and get the range
lines = f.axes[0].get_lines()
# we want thick lines
f.axes[0].get_frame().set_linewidth(3.0)
# get the tick lines in one big list
xticklines = f.axes[0].get_xticklines()
yticklines = f.axes[0].get_yticklines()
# set their marker edge width
pylab.setp(xticklines+yticklines, mew=2.0)
# set what kind of tickline they are (outside axes)
for l in xticklines: l.set_marker(matplotlib.lines.TICKDOWN)
for l in yticklines: l.set_marker(matplotlib.lines.TICKLEFT)
# get rid of the top and right ticks
f.axes[0].xaxis.tick_bottom()
f.axes[0].yaxis.tick_left()
# we want bold fonts
pylab.xticks(fontsize=20, fontweight='bold', fontname='Arial')
pylab.yticks(fontsize=20, fontweight='bold', fontname='Arial')
# we want to give the labels some breathing room (1% of the data range)
for label in pylab.xticks()[1]:
label.set_y(-0.02)
for label in pylab.yticks()[1]:
label.set_x(-0.01)
# set the position/size of the axis in the window
f.axes[0].set_position([0.1,0.1,0.8,0.8])
# set the axis labels
f.axes[0].set_title('')
f.axes[0].set_xlabel('')
f.axes[0].set_ylabel('')
# set the position of the legend far away
f.axes[0].legend(loc=[1.2,0])
f.canvas.Refresh()
# autoscale
self.OnButtonAutoscaleButton(None)
def generate_time_plot(methods, datasets, runtimes_per_method, colors):
num_methods = len(methods)
num_datasets = len(datasets)
x_ticks = np.linspace(0., 1., num_methods)
width = 0.6 / num_methods / num_datasets
spacing = 0.4 / num_methods / num_datasets
fig, ax1 = plt.subplots()
ax1.set_ylabel('Time [s]', color='b')
ax1.tick_params('y', colors='b')
ax1.set_yscale('log')
fig.suptitle("Hand-Eye Calibration Method Timings", fontsize='24')
handles = []
for i, dataset in enumerate(datasets):
runtimes = [runtimes_per_method[dataset][method] for method in methods]
bp = ax1.boxplot(
runtimes, 0, '',
positions=(x_ticks + (i - num_datasets / 2. + 0.5) *
spacing * 2),
widths=width)
plt.setp(bp['boxes'], color=colors[i], linewidth=line_width)
plt.setp(bp['whiskers'], color=colors[i], linewidth=line_width)
plt.setp(bp['fliers'], color=colors[i],
marker='+', linewidth=line_width)
plt.setp(bp['medians'], color=colors[i],
marker='+', linewidth=line_width)
plt.setp(bp['caps'], color=colors[i], linewidth=line_width)
handles.append(mpatches.Patch(color=colors[i], label=dataset))
plt.legend(handles=handles, loc=2)
plt.xticks(x_ticks, methods)
plt.xlim(x_ticks[0] - 2.5 * spacing * num_datasets,
x_ticks[-1] + 2.5 * spacing * num_datasets)
plt.show()
def corr_plot(datum,reef_name,outpath):
r = 3
num_blocks = int(np.ceil(np.sqrt(len(datum))))
fig, ax = plt.subplots(num_blocks,num_blocks, figsize = (20,24))
xlim = (-r, r)
ylim = ( -25,0)
plt.setp(ax, xlim=xlim, ylim=ylim)
axlist = []
for axl in ax:
for axl2 in axl:
axlist.append(axl2)
day_keys = list(datum.keys())
for i,dict_item in enumerate(datum.items()):
d = dict_item[1][2]
line = dict_item[1][0]
meta = dict_item[1][1]
sns.scatterplot(x = d['diff'], y = d.Height, color = 'blue', ax = axlist[i])
sns.lineplot(x = [-r,r], y = [line(-r),line(r)], color = 'black', ax = axlist[i])
axlist[i].set_xlabel('Log(Blue Band) - Log(Green Band)')
axlist[i].set_ylabel('Depth')
axlist[i].set_title(str(meta['dt'].date()))
xt = (list(axlist[i].get_xticks()))[:-1]
for i,x in enumerate(xt):
xt[i] = np.round(x,2)
fn = os.path.join(outpath,'corr_plot.png')
plt.savefig(fn)
def interev_mag(times, mags):
r"""Function to plot interevent times against magnitude for given times
and magnitudes.
:type times: list of datetime
:param times: list of the detection times, must be sorted the same as mags
:type mags: list of float
:param mags: list of magnitudes
"""
l = [(times[i], mags[i]) for i in xrange(len(times))]
l.sort(key=lambda tup: tup[0])
times = [x[0] for x in l]
mags = [x[1] for x in l]
# Make two subplots next to each other of time before and time after
fig, axes = plt.subplots(1, 2, sharey=True)
axes = axes.ravel()
pre_times = []
post_times = []
for i in range(len(times)):
if i > 0:
pre_times.append((times[i] - times[i - 1]) / 60)
if i < len(times) - 1:
post_times.append((times[i + 1] - times[i]) / 60)
axes[0].scatter(pre_times, mags[1:])
axes[0].set_title('Pre-event times')
axes[0].set_ylabel('Magnitude')
axes[0].set_xlabel('Time (Minutes)')
plt.setp(axes[0].xaxis.get_majorticklabels(), rotation=30)
axes[1].scatter(pre_times, mags[:-1])
axes[1].set_title('Post-event times')
axes[1].set_xlabel('Time (Minutes)')
plt.setp(axes[1].xaxis.get_majorticklabels(), rotation=30)
plt.show()
def draw(self):
data_len = len(self.data)
X = range(data_len)
data = [float(i) for i in self.data]
color = self.cp.get("Colors", item_name("Line", self.num))
line = self.ax.plot(X, data, marker="o", markeredgecolor=color,
markerfacecolor="white", markersize=13, linewidth=5,
markeredgewidth=5, color=color, label=self.cp.get("Labels",
item_name("Legend", self.num)))
max_ax = max(data)*1.1 if data else 0
if max_ax <= 10:
self.ax.set_ylim(-0.1, max_ax)
else:
self.ax.set_ylim(-0.5, max_ax)
self.ax.set_xlim(-1, data_len+1)
if self.mode == "hourly":
self.ax.xaxis.set_ticks((0, 8, 16, 24))
elif self.mode == "daily":
self.ax.xaxis.set_ticks((0, 15, 30))
elif self.mode == "monthly":
self.ax.xaxis.set_ticks((0, 4, 8, 12))
else:
raise Exception("Unknown time interval mode.")
if self.legend:
legend = self.ax.legend(loc=9, mode="expand",
bbox_to_anchor=(0.25, 1.02, 1., .102))
setp(legend.get_frame(), visible=False)
setp(legend.get_texts(), size=int(self.cp.get("Sizes",
"LegendSize")))
def plot():
fig, ax = plt.subplots(figsize=(10, 3))
df = pd.read_csv("noise_attackRate.csv", header=None)
toplot = df.values
index = np.arange(len(eLabels))
print(toplot)
ax = plt.axes()
#For bar
thisLine = ax.bar(index, toplot[:, 1])
plt.xlabel(r'$\epsilon(Privacy Loss)$', fontsize=22)
plt.ylabel("Attack Rate", fontsize=22)
plt.xticks(index, eLabels)
plt.yticks(np.arange(0, 1.4, step=0.5))
plt.setp(ax.get_xticklabels(), fontsize=18)
plt.setp(ax.get_yticklabels(), fontsize=18)
plt.tight_layout()
fig.savefig("fig_noise_krum.pdf")
def plot_inflow(sim, t_f=None, N_profile=5):
"""
Plot inflow profile at select times
"""
fig, ax = plt.subplots(1, figsize=(7, 4.5))
if t_f:
inds = np.where(sim.t_print < t_f)[0]
else:
inds = np.where(np.diff(sim.hc.mean(1).mean(1)) > 1e-6)[0]
freq = int(len(inds) / N_profile)
for ind in inds[freq - 1::freq]:
ax.plot(sim.xc.mean(0),
sim['hc'].mean(1)[ind],
next(linecycler),
label=np.round(sim.t_print[ind] / 60., 1))
legend = ax.legend(title="time (min)")
plt.setp(legend.get_title(), fontsize='medium')
plt.xlabel('x')
plt.ylabel("h (cm)")
def test2():
mu = 10.0
sigma = 2.0
x = Variable("x", float)
loggauss = -0.5 * math.log( 2.0 * math.pi * sigma * sigma ) - 0.5 * ((x - mu) ** 2) / (sigma * sigma)
f = Function(
name="foo",
params=(x,),
rettype=float,
expr=loggauss)
engine = create_execution_engine()
module = f.compile(engine)
func_ptr = engine.get_pointer_to_function(module.get_function("foo"))
samples = metropolis_hastings(func_ptr, sigma, 0.0, 1000, 2)
#plt.plot(np.arange(len(samples)), samples)
n, bins, patches = plt.hist(samples[500:], 25, normed=1, histtype='stepfilled')
plt.setp(patches, 'facecolor', 'g', 'alpha', 0.75)
# add a line showing the expected distribution
y = plt.normpdf(bins, mu, sigma)
l = plt.plot(bins, y, 'k--', linewidth=1.5)
plt.show()
def draw_plot(self):
""" Redraws the plot
"""
# when xmin is on auto, it "follows" xmax to produce a
# sliding window effect. therefore, xmin is assigned after
# xmax.
#
xwin_size = 360
if self.xmax_control.is_auto():
xmax = len(self.data) if len(self.data) > xwin_size else xwin_size
else:
xmax = int(self.xmax_control.manual_value())
if self.xmin_control.is_auto():
xmin = xmax - xwin_size
else:
xmin = int(self.xmin_control.manual_value())
# for ymin and ymax, find the minimal and maximal values
# in the data set and add a mininal margin.
#
# note that it's easy to change this scheme to the
# minimal/maximal value in the current display, and not
# the whole data set.
#
if self.ymin_control.is_auto():
ymin = round(min(self.data), 0) - 1
else:
ymin = int(self.ymin_control.manual_value())
if self.ymax_control.is_auto():
ymax = round(max(self.data), 0) + 1
else:
ymax = int(self.ymax_control.manual_value())
self.axes.set_xbound(lower=xmin, upper=xmax)
self.axes.set_ybound(lower=ymin, upper=ymax)
# anecdote: axes.grid assumes b=True if any other flag is
# given even if b is set to False.
# so just passing the flag into the first statement won't
# work.
#
if self.cb_grid.IsChecked():
self.axes.grid(True, color='gray')
else:
self.axes.grid(False)
# Using setp here is convenient, because get_xticklabels
# returns a list over which one needs to explicitly
# iterate, and setp already handles this.
#
pylab.setp(self.axes.get_xticklabels(),
visible=self.cb_xlab.IsChecked())
self.plot_data.set_xdata(np.arange(len(self.data)))
self.plot_data.set_ydata(np.array(self.data))
self.canvas.draw()
def heatmap(data, row_labels, col_labels, ax=None,
cbar_kw={}, cbarlabel="", **kwargs):
"""
Create a heatmap from a numpy array and two lists of labels.
Arguments:
data : A 2D numpy array of shape (N,M)
row_labels : A list or array of length N with the labels
for the rows
col_labels : A list or array of length M with the labels
for the columns
Optional arguments:
ax : A matplotlib.axes.Axes instance to which the heatmap
is plotted. If not provided, use current axes or
create a new one.
cbar_kw : A dictionary with arguments to
:meth:`matplotlib.Figure.colorbar`.
cbarlabel : The label for the colorbar
All other arguments are directly passed on to the imshow call.
"""
if not ax:
ax = plt.gca()
# Plot the heatmap
im = ax.imshow(data, **kwargs)
# create an axes on the right side of ax. The width of cax will be 5%
# of ax and the padding between cax and ax will be fixed at 0.05 inch.
divider = make_axes_locatable(ax)
cax = divider.append_axes("right", size="5%", pad=0.05)
cbar = ax.figure.colorbar(im, ax=ax, cax=cax, **cbar_kw)
cbar.ax.set_ylabel(cbarlabel, rotation=-90, va="bottom")
# We want to show all ticks...
ax.set_xticks(np.arange(data.shape[1]))
ax.set_yticks(np.arange(data.shape[0]))
# ... and label them with the respective list entries.
ax.set_xticklabels(col_labels)
ax.set_yticklabels(row_labels)
# Let the horizontal axes labeling appear on top.
ax.tick_params(top=True, bottom=False,
labeltop=True, labelbottom=False)
# Rotate the tick labels and set their alignment.
plt.setp(ax.get_xticklabels(), rotation=-30, ha="right",
rotation_mode="anchor")
# Turn spines off and create white grid.
# for edge, spine in ax.spines.items():
# spine.set_visible(False)
ax.set_xticks(np.arange(0 ,data.shape[1 ] +1 ) -0.5, minor=True)
ax.set_yticks(np.arange(0 ,data.shape[0 ] +1 ) -0.5, minor=True)
# ax.grid(which="minor", color="w", linestyle='-', linewidth=3)
# ax.tick_params(which="minor", bottom=False, left=False)
return im, cbar
def dss(phot, survey='poss1_red', subplot_args=()):
"""
Grab DSS finder chart and overplot axis
"""
# Create Figure
fig = plt.gcf()
if subplot_args == ():
subplot_args = (111, )
try:
# Download DSS image
hduL_dss = read_fits_dss(phot, survey=survey)
header_dss = hduL_dss[0].header
wcs_dss = astropy.wcs.find_all_wcs(header_dss)[0]
dss = hduL_dss[0].data
# Compute verticies of the medframe image used to set limits
ny, nx = phot.medframe.shape # row is y, col is x
wcs_medframe = astropy.wcs.find_all_wcs(phot.header_medframe,
keysel=['binary'])
wcs_medframe = wcs_medframe[0]
verts_medframe_pix = np.array([[0, 0], [nx, 0], [nx, ny], [0, ny],
[0, 0]])
verts_medframe_pix = verts_medframe_pix - 0.5
verts_medframe_world = wcs_medframe.all_pix2world(
verts_medframe_pix, 0)
verts_dss_pix = wcs_dss.all_world2pix(verts_medframe_world, 0)
mm = lambda x: (np.min(x), np.max(x))
xl = mm(verts_dss_pix[:, 0])
yl = mm(verts_dss_pix[:, 1])
# Make the plot
ax = fig.add_subplot(*subplot_args, projection=wcs_dss)
tr_fk5 = ax.get_transform('fk5')
overlay = ax.get_coords_overlay('fk5')
overlay['ra'].set_ticks(color='white')
overlay['dec'].set_ticks(color='white')
overlay.grid(color='white', linestyle='solid', alpha=0.5)
plt.plot(phot.ap_verts['ra'],
phot.ap_verts['dec'],
transform=tr_fk5,
color='LimeGreen',
lw=2)
im = plt.imshow(dss, cmap='gray')
plt.plot(verts_medframe_world[:, 0],
verts_medframe_world[:, 1],
transform=tr_fk5,
color='LightSalmon',
lw=2)
title = '{}, {}\n'.format(survey, header_dss['DATE-OBS'][:4])
plt.setp(ax, xlim=xl, ylim=yl, title=title, xlabel='RA', ylabel='Dec')
except:
ax = fig.add_subplot(*subplot_args)
error = str(sys.exc_info())
error = textwrap.fill(error, 50)
ax.text(0, 1, error, transform=ax.transAxes, va='top')
def show_histogram(values):
n, bins, patches = plt.hist(values.reshape(-1), 50, normed=1)
bin_centers = 0.5 * (bins[:-1] + bins[1:])
for c, p in zip(normalize(bin_centers), patches):
plt.setp(p, 'facecolor', plt.cm.viridis(c))
plt.show()
def showGraph(df, decision):
columns = st.slider('Columns', 5, 40, 10)
asc = st.checkbox('Lowest to Highest')
df = df.groupby('state').mean().reset_index()
df = df.sort_values(by=decision, ascending = asc).head(columns)
plot = sns.barplot(data=df, x = df['state'], y = df[decision], palette = sns.color_palette(n_colors=1))
plt.setp(plot.get_xticklabels(), rotation=90)
st.pyplot()
def dateticks(fmt='%Y-%m', **kwargs):
'''setup the date ticks'''
dateticker = ticker.FuncFormatter(lambda numdate, _: num2date(numdate).strftime(fmt))
pylab.gca().xaxis.set_major_formatter(dateticker)
# pylab.gcf().autofmt_xdate()
tmp = dict(rotation=30, ha='right')
tmp.update(kwargs)
pylab.setp(pylab.xticks()[1], **tmp)
def heatmap(data, row_labels, col_labels, ax=None,
cbar_kw={}, cbarlabel="", title = "", **kwargs):
"""
Create a heatmap from a numpy array and two lists of labels.
Arguments:
data : A 2D numpy array of shape (N,M)
row_labels : A list or array of length N with the labels
for the rows
col_labels : A list or array of length M with the labels
for the columns
Optional arguments:
ax : A matplotlib.axes.Axes instance to which the heatmap
is plotted. If not provided, use current axes or
create a new one.
cbar_kw : A dictionary with arguments to
:meth:`matplotlib.Figure.colorbar`.
cbarlabel : The label for the colorbar
All other arguments are directly passed on to the imshow call.
"""
if not ax:
ax = plt.gca()
# Plot the heatmap
im = ax.imshow(data, **kwargs)
ax.set_title(title, pad =50.0)
# create an axes on the right side of ax. The width of cax will be 5%
# of ax and the padding between cax and ax will be fixed at 0.05 inch.
divider = make_axes_locatable(ax)
cax = divider.append_axes("right", size="5%", pad=0.05)
cbar = ax.figure.colorbar(im, ax=ax, cax=cax, **cbar_kw)
cbar.ax.set_ylabel(cbarlabel, rotation=-90, va="bottom")
# We want to show all ticks...
ax.set_xticks(np.arange(data.shape[1]))
ax.set_yticks(np.arange(data.shape[0]))
# ... and label them with the respective list entries.
ax.set_xticklabels(col_labels)
ax.set_yticklabels(row_labels)
# Let the horizontal axes labeling appear on top.
ax.tick_params(top=True, bottom=False,
labeltop=True, labelbottom=False)
# Rotate the tick labels and set their alignment.
plt.setp(ax.get_xticklabels(), rotation=-30, ha="right",
rotation_mode="anchor")
# Turn spines off and create white grid.
# for edge, spine in ax.spines.items():
# spine.set_visible(False)
ax.set_xticks(np.arange(0, data.shape[1] + 1) - 0.5, minor=True)
ax.set_yticks(np.arange(0, data.shape[0] + 1) - 0.5, minor=True)
# ax.grid(which="minor", color="w", linestyle='-', linewidth=3)
# ax.tick_params(which="minor", bottom=False, left=False)
return im, cbar
def plot_data(hist):
X = np.arange(len(hist))
plt.bar(X, hist.values(), align='center', width=0.5)
plt.xticks(X, hist.keys())
locs, labels = plt.xticks()
plt.setp(labels, rotation=90)
ymax = max(hist.values()) + 0.1
plt.ylim(0, ymax)
plt.show()
def create(self, images, x, y, mag, plot=False):
"""Using some input images and a catalog entry, define the pixel aperture for a star."""
# keep track of the basics of this aperture
self.x, self.y, self.mag = x, y, mag
# figure out which label in the labeled image is relevant to this star
label = images['labeled'][np.round(y), np.round(x)]
if label == 0:
self.row, self.col = np.array([np.round(y).astype(np.int)]), np.array([np.round(x).astype(np.int)])
else:
# identify and sort the pixels that might contribute
ok = images['labeled'] == label
okr, okc = ok.nonzero()
sorted = np.argsort(images['stars'][ok]/images['noise'][ok])[::-1]
signal = np.cumsum(images['stars'][ok][sorted])
noise = np.sqrt(np.cumsum(images['noise'][ok][sorted]**2))
snr = signal/noise
mask = ok*0
toinclude = sorted[:np.argmax(snr)+1]
mask[okr[toinclude], okc[toinclude]] = 1
self.row, self.col = okr[toinclude], okc[toinclude]
if plot:
fi = plt.figure('selecting an aperture', figsize=(10,3), dpi=100)
fi.clf()
gs = gridspec.GridSpec(3,2,width_ratios=[1,.1], wspace=0.1, hspace=0.01, top=0.9, bottom=0.2)
ax_line = plt.subplot(gs[:,0])
ax_image = plt.subplot(gs[0,1])
ax_ok = plt.subplot(gs[1,1])
ax_mask = plt.subplot(gs[2,1])
shape = ok.shape
row, col = ok.nonzero()
left, right = np.maximum(np.min(col)-1, 0), np.minimum(np.max(col)+2, shape[1])
bottom, top = np.maximum(np.min(row)-1, 0), np.minimum(np.max(row)+2, shape[1])
kwargs = dict( extent=[left, right, bottom, top], interpolation='nearest')
ax_image.imshow(np.log(images['median'][bottom:top, left:right]), cmap='gray_r', **kwargs)
ax_ok.imshow(ok[bottom:top, left:right], cmap='Blues', **kwargs)
ax_mask.imshow(mask[bottom:top, left:right], cmap='YlOrRd', **kwargs)
for a in [ax_ok, ax_mask, ax_image]:
plt.setp(a.get_xticklabels(), visible=False)
plt.setp(a.get_yticklabels(), visible=False)
ax_line.plot(signal.flatten(), signal.flatten()/noise.flatten(), marker='o', linewidth=1, color='black',alpha=0.5, markersize=10)
ax_line.set_xlabel('Total Star Flux in Aperture')
ax_line.set_ylabel('Total Signal-to-Noise Ratio')
ax_line.set_title('{0:.1f} magnitude star'.format(mag))
plt.draw()
self.input('hmmm?')
self.n = len(self.row)
logger.info('created {0}'.format(self))
def print_histogram(y, num_bins):
# Prints a histogram of input array with equally spaced bins
# Input
# y: array
# num_bins: number of bins in histogram
_, _, patches = py.hist(y, num_bins, histtype='stepfilled')
py.setp(patches, 'facecolor', 'g', 'alpha', 0.75)
py.show()
def make_chart(self,data=np.zeros(1),bins=np.arange(10)+1,polar=False):
self.polar_chart = polar
self.hist_bins = []
self.hist_patches = []
self.x = np.arange(17)
self.means = np.zeros(self.x.size)
self.stds = np.zeros(self.x.size)
self.fitting_x = np.linspace(self.x[0], self.x[-1], 100, endpoint=True)
self.fitting_y = np.zeros(self.fitting_x.size)
self.fig.clear()
grid = 18
height = grid // 9
gs = gridspec.GridSpec(grid, grid)
# make tuning curve plot
axes = self.fig.add_subplot(gs[:-height*2,height//2:-height//2],polar=polar)
if polar:
self.curve_data = axes.plot(self.x, self.means, 'ko-')[0]
else:
adjust_spines(axes,spines=['left','bottom','right'],spine_outward=['left','right','bottom'],xoutward=10,youtward=30,\
xticks='bottom',yticks='both',tick_label=['x','y'],xaxis_loc=5,xminor_auto_loc=2,yminor_auto_loc=2)
axes.set_ylabel('Response(spikes/sec)',fontsize=12)
self.curve_data = axes.plot(self.x, self.means, self.data_point_styles[0])[0]
self.errbars = axes.errorbar(self.x, self.means, yerr=self.stds, fmt='k.') if self.showing_errbar else None
self.curve_axes = axes
self.fitting_data = axes.plot(self.fitting_x, self.fitting_y, self.fitting_curve_styles[0])[0]
axes.set_ylim(0,100)
axes.relim()
axes.autoscale_view(scalex=True, scaley=False)
axes.grid(b=True, which='major',axis='both',linestyle='-.')
# make histgrams plot
rows,cols = (grid-height,grid)
for row in range(rows,cols)[::height]:
for col in range(cols)[::height]:
axes = self.fig.add_subplot(gs[row:row+height,col:col+height])
axes.set_axis_bgcolor('white')
#axes.set_title('PSTH', size=8)
axes.set_ylim(0,100)
if col == 0:
adjust_spines(axes,spines=['left','bottom'],xticks='bottom',yticks='left',tick_label=['y'],xaxis_loc=4,yaxis_loc=3)
axes.set_ylabel('Spikes',fontsize=11)
elif col == cols-height:
adjust_spines(axes,spines=['right','bottom'],xticks='bottom',yticks='right',tick_label=['y'],xaxis_loc=4,yaxis_loc=3)
else:
adjust_spines(axes,spines=['bottom'],xticks='bottom',yticks='none',tick_label=[],xaxis_loc=4,yaxis_loc=3)
pylab.setp(axes.get_xticklabels(), fontsize=8)
pylab.setp(axes.get_yticklabels(), fontsize=8)
_n, bins, patches = axes.hist(data, bins, facecolor='black', alpha=1.0)
self.hist_bins.append(bins)
self.hist_patches.append(patches)
self.fig.canvas.draw()
def plotCorrEnh(self, parsList=None, **plotArgs):
"""
Produces enhanced correlation plots.
Parameters
----------
parsList : list of string, optional
If not given, all available traces are used.
Otherwise a list of at least two parameters
has to be specified.
plotArgs : dict, optional
Keyword arguments handed to plot procedures of
pylab. The following keywords are available:
contour,bins,cmap,origin,interpolation,colors
"""
if not ic.check["matplotlib"]:
PE.warn(PE.PyARequiredImport("To use 'plotCorr', matplotlib has to be installed.", \
solution="Install matplotlib."))
return
tracesDic = {}
if parsList is not None:
for parm in parsList:
self._parmCheck(parm)
tracesDic[parm] = self[parm]
if len(tracesDic) < 2:
raise(PE.PyAValError("For plotting correlations, at least two valid parameters are needed.", \
where="TraceAnalysis::plotCorr"))
else:
# Use all available traces
for parm in self.availableParameters():
tracesDic[parm] = self[parm]
pars = tracesDic.keys()
traces = tracesDic.values()
fontmap = {1:10, 2:9, 3:8, 4:8, 5:8}
if not len(tracesDic)-1 in fontmap:
fontmap[len(tracesDic)-1] = 8
k = 1
for j in range(len(tracesDic)):
for i in range(len(tracesDic)):
if i>j:
plt.subplot(len(tracesDic)-1,len(tracesDic)-1,k)
# plt.title("Pearson's R: %1.5f" % self.pearsonr(pars[j],pars[i])[0], fontsize='x-small')
plt.xlabel(pars[j], fontsize=fontmap[len(tracesDic)-1])
plt.ylabel(pars[i], fontsize=fontmap[len(tracesDic)-1])
tlabels = plt.gca().get_xticklabels()
plt.setp(tlabels, 'fontsize', fontmap[len(tracesDic)-1])
tlabels = plt.gca().get_yticklabels()
plt.setp(tlabels, 'fontsize', fontmap[len(tracesDic)-1])
# plt.plot(traces[j],traces[i],'.',**plotArgs)
self.__hist2d(traces[j],traces[i],**plotArgs)
if i!=j:
k+=1
def modifValZone(self, nameVar, ind, val):
"""modifier dans la zone nameVar la valeur
ou liste valeur, attention le texte de la zone contient nom et valeur"""
obj = self.listeZoneText[nameVar][ind].getObject()
if type(obj) == type([2, 3]):
for i in range(len(obj)):
pl.setp(obj[i], text=str(val[i]))
else:
nom = pl.getp(obj, "text").split("\n")[0]
pl.setp(obj, text=nom + "\n" + str(val)[:16])
self.redraw()
def test_geometric_mechanism(alpha, n_bins=10):
X = geometric_mechanism(alpha, 10000)
# plot geometric distribution
n, bins, patches = P.hist(X, 2*n_bins, range=(-n_bins,n_bins), normed=1, histtype='stepfilled') # bins: ndarray of 51 elements
P.setp(patches, 'facecolor', 'g', 'alpha', 0.75)
print bins
# add a line showing the expected distribution
x = np.array(range(-n_bins, n_bins+1)) # x: -n_bins -> n_bins
y = np.power(alpha, abs(x))*(1-alpha)/(1+alpha) # y = (1-alpha)/(1+alpha)*alpha^|x|
l = P.plot(x, y, 'k--', linewidth=1.5)
P.show()
def scatter(x,y):
from matplotlib.pylab import figure,show, setp
fig=figure()
ax1 = fig.add_subplot(1,1,1)
xmax=np.max(x)+0.5
markerline, stemline, baseline = ax1.stem(x,y,'-.')
setp(markerline, 'markerfacecolor', 'b')
setp(baseline, 'color', 'r', 'linewidth', 2)
ax1.set_xlabel('Evento')
ax1.set_ylabel('Residuo (s)')
ax1.set_xlim([0.5,xmax])
show()
def plot_model(galaxy, sect = [x1, x2, y1, y2], directory = '/Volumes/VINCE/dwarfs/combined_VCC/figures/'):
'''
A wrapper to plot galfit results, bad pixel mask and other info
INPUT
'galaxy': Single row of the dataframe produced by the procedure the for loop
below
'sect' : Image sector produced by sector(header). It is the same for all
galaxies. Do not need to call sector(header) every time.
'directory': Where to save the results. Directory needs to be created
'''
plt.ioff()
fig, axarr = plt.subplots(2,3)
#fig.suptitle('{}'.format(f))
hdu = fits.open(galaxy['MODEL'])
image = ndimage.gaussian_filter(hdu[1].data, 1)
axarr[0, 0].imshow(image, cmap='gray', norm=LogNorm(), vmin=1, vmax = 50)
axarr[0, 0].set_title('Image')
model = hdu[2].data
axarr[0, 1].imshow(model, cmap='Blues', norm=LogNorm(), vmin=0.01, vmax = 6)
axarr[0, 1].set_title('Model')
residuals = ndimage.gaussian_filter(hdu[3].data, 1)
axarr[1, 0].imshow(residuals, cmap='gray', norm=LogNorm(), vmin=1, vmax = 50)
axarr[1, 0].set_title('Residuals')
x1, x2, y1, y2 = sect[0], sect[1], sect[2], sect[3]
themask = themask = getdata(galaxy['MASK'])[x1:x2,y1:y2]
axarr[1, 1].imshow(themask, cmap='gray', vmin=0, vmax = 1)
axarr[1, 1].set_title('Mask')
axarr[0, 2].text(0.2, 1.0,r'Galaxy: VCC{}'.format(galaxy['ID']), va="center", ha="left")
axarr[0, 2].text(0.2, 0.9,r'mtot $=$ {}'.format(galaxy['mtot']), va="center", ha="left")
axarr[0, 2].text(0.2, 0.8,r'Re $=$ {} pc'.format(galaxy['Re']), va="center", ha="left")
axarr[0, 2].text(0.2, 0.7,r'n $=$ {}'.format(galaxy['n']), va="center", ha="left")
axarr[0, 2].text(0.2, 0.6,r'PA $=$ {}'.format(galaxy['PA']), va="center", ha="left")
axarr[0, 2].text(0.2, 0.5,r'chi2nu $=$ {}'.format(galaxy['chi2nu']), va="center", ha="left")
axarr[0, 2].set_aspect('equal')
axarr[0, 2].axis('off')
axarr[1, 2].set_aspect('equal')
axarr[1, 2].axis('off')
fig.subplots_adjust(hspace=0., wspace = 0.)
plt.setp([a.get_xticklabels() for a in axarr.flatten()], visible=False);
plt.setp([a.get_yticklabels() for a in axarr.flatten()], visible=False);
fig.savefig(directory + '{}.png'.format(f.split('/')[-1]), dpi= 200)
plt.close(fig)
def violin_plot(ax, values_list, measure_name, group_names, fontsize, color='blue', ttest=False):
'''
This is a little wrapper around the statsmodels violinplot code
so that it looks nice :)
'''
# IMPORTS
import matplotlib.pylab as plt
import statsmodels.api as sm
import numpy as np
# Make your violin plot from the values_list
# Don't show the box plot because it looks a mess to be honest
# we're going to overlay a boxplot on top afterwards
plt.sca(ax)
# Adjust the font size
font = { 'size' : fontsize}
plt.rc('font', **font)
max_value = np.max(np.concatenate(values_list))
min_value = np.min(np.concatenate(values_list))
vp = sm.graphics.violinplot(values_list,
ax = ax,
labels = group_names,
show_boxplot=False,
plot_opts = { 'violin_fc':color ,
'cutoff': True,
'cutoff_val': max_value,
'cutoff_type': 'abs'})
# Now plot the boxplot on top
bp = plt.boxplot(values_list, sym='x')
for key in bp.keys():
plt.setp(bp[key], color='black', lw=fontsize/10)
# Adjust the power limits so that you use scientific notation on the y axis
plt.ticklabel_format(style='sci', axis='y')
ax.yaxis.major.formatter.set_powerlimits((-3,3))
plt.tick_params(axis='both', which='major', labelsize=fontsize)
# Add the y label
plt.ylabel(measure_name, fontsize=fontsize)
# And now turn off the major ticks on the y-axis
for t in ax.yaxis.get_major_ticks():
t.tick1On = False
t.tick2On = False
return ax
def PlotCheckMuseBias(filename):
'''
'''
#fig = plt.figure()
#fig.subplots_adjust(wspace=0.3, hspace=0.01)
datos=open(filename,'r').read().splitlines()
datos=[x.split() for x in datos]
for ifu in range(1,25):
f,axarr = plt.subplots(2,2)
#read RON for Q1, Q2, Q3 and Q4
q1ron=[float(x[Q1]) for x in datos[1:] if x[CH]=='CHAN%02d'%ifu]
q2ron=[float(x[Q2]) for x in datos[1:] if x[CH]=='CHAN%02d'%ifu]
q3ron=[float(x[Q3]) for x in datos[1:] if x[CH]=='CHAN%02d'%ifu]
q4ron=[float(x[Q4]) for x in datos[1:] if x[CH]=='CHAN%02d'%ifu]
#TODO: Add red line at 3 e of RON
#TODO: use dots i the graphs
#TODO: save files with CHANXX.jpg
axarr[1,0].set_ylim([1.5,5])
axarr[1,0].set_xlim([0,120])
axarr[1,0].set_ylabel('RON [e]')
axarr[1,0].plot(q1ron)
axarr[1,0].hlines(3.0,0,120,color="red")
axarr[1,0].grid()
axarr[1,0].set_title('CHAN%02d Q1'%ifu)
axarr[1,1].set_ylim([1.5,5])
axarr[1,1].set_xlim([0,120])
axarr[1,1].plot(q2ron)
axarr[1,1].hlines(3.0,0,120,color="red")
axarr[1,1].grid()
axarr[1,1].set_title('CHAN%02d Q2'%ifu)
axarr[0,1].set_ylim([1.5,5])
axarr[0,1].set_xlim([0,120])
axarr[0,1].plot(q3ron)
axarr[0,1].hlines(3.0,0,120,color="red")
axarr[0,1].grid()
axarr[0,1].set_title('CHAN%02d Q3'%ifu)
axarr[0,0].set_ylim([1.5,5])
axarr[0,0].set_xlim([0,120])
axarr[0,0].set_ylabel('RON [e]')
axarr[0,0].plot(q4ron)
axarr[0,0].hlines(3.0,0,120,color="red")
axarr[0,0].grid()
axarr[0,0].set_title('CHAN%02d Q4'%ifu)
#hide x ticks for top plots
plt.setp([a.get_xticklabels() for a in axarr[0,:]], visible=False)
plt.savefig('CHAN%02d_RON.jpg'%ifu)
plt.close()
def threehists(x1,x2,x3,xmin,xmax,x1leg='$x_1$',x2leg='$x_2$',x3leg='$x_3$',xlabel='',fig=1,sharey=False,fontsize=12):
"""
Script that plots three histograms of quantities x1, x2 and x3
sharing the same X-axis.
Arguments:
- x1,x2,x3: arrays with data to be plotted
- xmin,xmax: lower and upper range of plotted values, will be used to set a consistent x-range for both histograms.
- x1leg, x2leg, x3leg: legends for each histogram
- xlabel: self-explanatory.
- sharey: sharing the Y-axis among the histograms?
- fig: which plot window should I use?
Example:
x1=Lbol(AD), x2=Lbol(JD), x3=Lbol(EHF10)
>>> threehists(x1,x2,x3,38,44,'AD','JD','EHF10','$\log L_{\\rm bol}$ (erg s$^{-1}$)',sharey=True)
Inspired by `Scipy <http://www.scipy.org/Cookbook/Matplotlib/Multiple_Subplots_with_One_Axis_Label>`_.
"""
pylab.rcParams.update({'font.size': fontsize})
fig=pylab.figure(fig)
pylab.clf()
a=fig.add_subplot(3,1,1)
if sharey==True:
b=fig.add_subplot(3,1,2, sharex=a, sharey=a)
c=fig.add_subplot(3,1,3, sharex=a, sharey=a)
else:
b=fig.add_subplot(3,1,2, sharex=a)
c=fig.add_subplot(3,1,3, sharex=a)
a.hist(x1,label=x1leg,color='b',histtype='stepfilled')
a.legend(loc='best',frameon=False)
a.set_xlim(xmin,xmax)
b.hist(x2,label=x2leg,color='r',histtype='stepfilled')
b.legend(loc='best',frameon=False)
c.hist(x3,label=x3leg,color='y',histtype='stepfilled')
c.legend(loc='best',frameon=False)
pylab.setp(a.get_xticklabels(), visible=False)
pylab.setp(b.get_xticklabels(), visible=False)
c.set_xlabel(xlabel)
b.set_ylabel('Number')
pylab.minorticks_on()
pylab.subplots_adjust(hspace=0.15)
pylab.draw()
pylab.show()
def plot_method_pairs_and_matrix(case_studies,fileappend=''):
case_cov=np.cov(case_studies.transpose())
case_corr=np.corrcoef(case_studies.transpose())
cmatrix= case_corr
fig = plt.figure(figsize=(twocol,twocol),dpi=figdpi,tight_layout=True)
ax = fig.add_subplot(111)
ppl.pcolormesh(fig,ax,cmatrix[inds][:,inds],#-np.diag([.99]*len(meths)),
yticklabels=np.array(mindex)[inds].tolist(),
xticklabels=np.array(mindex)[inds].tolist(),
cmap=ppl.mpl.cm.RdBu,vmax=0.4,vmin= -0.4)
ax.tick_params(axis='both', which='major', labelsize=8)
plt.setp(ax.get_xticklabels(), rotation='vertical')
cm=dark2
[l.set_color(cm[m_codes[mindex.index(l.get_text())]]) for i,l in enumerate(ax.get_yticklabels())]
[l.set_color(cm[m_codes[mindex.index(l.get_text())]]) for i,l in enumerate(ax.get_xticklabels())]
fig.show()
fig.savefig(figure_path+('method_matrix%s.pdf'%fileappend))
#Show the highly correlated methods
pq=PQ()
pq_cross=PQ()
for i in range(len(meths)):
for j in range(i+1,len(meths)):
m1text='(%s) %s'%(meths[i,1],meths[i,0])
m2text='(%s) %s'%(meths[j,1],meths[j,0])
pq.put((-cmatrix[i,j],(m1text,m2text)))
if meths[i,1]!= meths[j,1]:
pq_cross.put((-cmatrix[i,j],(m1text,m2text)))
# Output the method correlations
# Sets how many highly correlated methods should be displayed
print_cap = 20
moutfile = open(results_path+('method_corrs%s.csv'%fileappend),'w')
print 'All methods:'
for i in range(pq.qsize()):
v,(m1,m2)=pq.get()
if i < print_cap:
print '%.2f & %s & %s\\\\'%(-v,m1,m2)
moutfile.write('%.9f | %s | %s\n'%(-v,m1,m2))
moutfile.close()
moutfile = open(results_path+('method_corrs_cross%s.csv'%fileappend),'w')
print 'Just cross methods:'
for i in range(pq_cross.qsize()):
v,(m1,m2)=pq_cross.get()
if i < print_cap:
print '%.2f & %s & %s\\\\'%(-v,m1,m2)
moutfile.write('%.9f | %s | %s\n'%(-v,m1,m2))
moutfile.close()
def drawPieChart(data, labels, title):
fig = plt.figure(dpi=100, figsize=(8,8))
# first axes
ax1 = fig.add_axes([0.1, 0.1, 0.8, 0.8])
patches, texts, autotexts = ax1.pie(data, labels=labels, autopct='%1.1f%%', colors=['yellowgreen', 'gold', 'lightskyblue', 'lightcoral'])
plt.setp(autotexts, fontproperties=myFont, size=tipSize)
plt.setp(texts, fontproperties=myFont, size=tipSize)
ax1.set_title(title,fontproperties=myFont, size=titleSize)
ax1.set_aspect(1)
#plt.show()
plt.savefig(sv_file_dir+'/'+title+'.png', format='png')
plt.cla()
plt.clf()
plt.close()
print 'drawPieChart',title,'over'
def drawMain(self):
#--------- Load image with current index ---------
self.imageData = mpimg.imread(os.path.join(self.imageFolder.get(),self.imageNames[self.currentIndex.get()]))
#--------- Delete old image and plot new ---------
plt.figure('Main')
self.ax['Main'].cla()
self.rect = []
self.flowRegion = []
self.mainImage = plt.imshow(self.imageData,cmap=cMaps[self.colorMap.get()])
self.ax['Main'].set_aspect('equal', 'datalim')
plt.setp(self.ax['Main'].get_xticklabels(), visible=False)
plt.setp(self.ax['Main'].get_yticklabels(), visible=False)
self.canvas['Main'].draw()
self.ax['Main'].autoscale(False)
return
def test_geom_distr(alpha):
# GEOMETRIC DISTR
X = np.random.geometric(alpha, 10000)
# plot geometric distribution
n_bins = 10
n, bins, patches = P.hist(X, n_bins, range=(1,n_bins+1), normed=1, histtype='stepfilled') # bins: ndarray of 51 elements
P.setp(patches, 'facecolor', 'g', 'alpha', 0.75)
print bins
# add a line showing the expected distribution
x = np.array(range(1, n_bins+1)) # x: 1 -> n_bins
y = np.power(1-alpha, x-1)*alpha # y = (1-alpha)^(x-1)*alpha
l = P.plot(bins[0:n_bins], y, 'k--', linewidth=1.5)
P.show()
def hide(self, objs='xticklabels', ax=None):
"""
Hide `objs` on all axes of this group * except* for those
specified in `ax`.
Parameters
----------
objs :
str {'xticklabels', 'yticklabels', 'minorxticks', 'minoryticks'}
or a list of these.
ax :
axes, optional (default: hide all)
The axes(or list of axes) on which these items should
not be hidden.
Examples
--------
Hide the xticklabels on all axes except ax0:
:
hide('xticklabels', self.ax0)
To hide all xticklabels, simply do:
hide('xticklabels')
See also
--------
antiset
"""
if objs.__class__ is str:
objs = [objs]
types = {'x': ['xticklabels', 'minorxticks'],
'y': ['yticklabels', 'minoryticks']}
for obj in objs:
if ax.__class__ is str and ax == 'all':
axs = self.flat
else:
if ax is None:
if obj in types['x'] and hasattr(self, '_xlabel_ax'):
ax = self._xlabel_ax
elif obj in types['y'] and hasattr(self, '_ylabel_ax'):
ax = self._ylabel_ax
else: # This gives default behavior?
ax = []
if not hasattr(ax, '__len__'):
ax = [ax]
axs = list(self.to_set() - set(ax))
for axn in axs:
if obj == 'xticklabels':
pylab.setp(axn.get_xticklabels(), visible=False)
elif obj == 'yticklabels':
pylab.setp(axn.get_yticklabels(), visible=False)
elif obj == 'minorxticks':
pylab.setp(axn.xaxis.get_minorticklines(), visible=False)
elif obj == 'minoryticks':
pylab.setp(axn.yaxis.get_minorticklines(), visible=False)
else:
error