def test_check_reference_2(self):
irods_metadata = IrodsSeqFileMetadata(fpath='/seq/1234/1234_5#6.cram',
references=['/lustre/hs37d5.fa'])
result = irods_metadata.check_reference('')
self.assertEqual(result.result, None)
self.assertEqual(result.executed, False)
def test_check_reference_3(self):
irods_metadata = IrodsSeqFileMetadata(fpath='/seq/1234/1234_5#6.cram')
result = irods_metadata.check_reference('')
self.assertEqual(result.result, None)
self.assertEqual(result.executed, False)
def test_check_reference_when_ok(self):
irods_metadata = IrodsSeqFileMetadata(fpath='/seq/1234/1234_5#6.cram',
references=['/lustre/hs37d5.fa'])
result = irods_metadata.check_reference('hs37d5')
self.assertEqual(result.result, RESULT.SUCCESS)