"""Module responsible for storage of serializers used in Labels endpoints."""
from flask_restplus import fields
from medtagger.api import api
from medtagger.database.models import RectangularLabelElement, BrushLabelElement, PointLabelElement, ChainLabelElement
from medtagger.definitions import LabelVerificationStatus, LabelElementStatus, LabelTool
in__action_response = api.model("Response for Action", {})
in__label_status = api.model("Status for label", {
'status': fields.String(description='New status for label',
enum=[status.name for status in LabelVerificationStatus],
required=True),
})
out__common_label_element = api.model('Common Label Element model', {
'label_element_id': fields.String(description='Label Element\'s ID', attribute='id'),
'slice_index': fields.Integer(description='Slice\'s order index', min=0),
'tag': fields.String(description='Element\'s tag', attribute='tag.key'),
'tool': fields.String(description='Element\'s tool', attribute='tool.value',
enum=[tool.name for tool in LabelTool]),
'status': fields.String(description='Element\'s status', attribute='status.value',
enum=[status.name for status in LabelElementStatus]),
})
out__rectangular_label_element = api.inherit('Rectangular Label Element model', out__common_label_element, {
'x': fields.Float(description='Element\'s X position', min=0.0, max=1.0),
'y': fields.Float(description='Element\'s Y position', min=0.0, max=1.0),
'width': fields.Float(description='Element\'s width', min=0.0, max=1.0),
'height': fields.Float(description='Element\'s height', min=0.0, max=1.0),
"""Module responsible for storage of serializers used in Labels endpoints."""
from flask_restplus import fields
from medtagger.api import api
from medtagger.database.models import RectangularLabelElement, BrushLabelElement
from medtagger.definitions import LabelVerificationStatus, LabelElementStatus, LabelTool
in__label_status = api.model("Status for label", {
'status': fields.String(description='New status for label',
enum=[status.name for status in LabelVerificationStatus],
required=True),
})
out__common_label_element = api.model('Common Label Element model', {
'label_element_id': fields.String(description='Label Element\'s ID', attribute='id'),
'slice_index': fields.Integer(description='Slice\'s order index', min=0),
'tag': fields.String(description='Element\'s tag', attribute='tag.key'),
'tool': fields.String(description='Element\'s tool', attribute='tool.value',
enum=[tool.name for tool in LabelTool]),
'status': fields.String(description='Element\'s status', attribute='status.value',
enum=[status.name for status in LabelElementStatus]),
})
out__rectangular_label_element = api.inherit('Rectangular Label Element model', out__common_label_element, {
'x': fields.Float(description='Element\'s X position', min=0.0, max=1.0),
'y': fields.Float(description='Element\'s Y position', min=0.0, max=1.0),
'width': fields.Float(description='Element\'s width', min=0.0, max=1.0),
'height': fields.Float(description='Element\'s height', min=0.0, max=1.0),
})
out__brush_label_element = api.inherit('Brush Label Element model', out__common_label_element, {
"""Module responsible for storage of serializers used in Scans endpoints."""
from flask_restplus import reqparse, fields
from medtagger.api import api
from medtagger.definitions import ScanStatus, LabelVerificationStatus
in__new_scan = api.model('New Scan model', {
'dataset': fields.String(description='Dataset', required=True),
'number_of_slices': fields.Integer(description='Number of Slices that will be uploaded', required=True),
})
elements_schema = {
'type': 'array',
"items": {
"type": "object",
'oneOf': [
{'$ref': '#/definitions/rectangular_label_element_schema'},
{'$ref': '#/definitions/brush_label_element_schema'},
{'$ref': '#/definitions/point_label_element_schema'},
{'$ref': '#/definitions/chain_label_element_schema'},
],
},
'definitions': {
'rectangular_label_element_schema': {
'properties': {
'x': {'type': 'number', 'minimum': 0.0, 'maximum': 1.0},
'y': {'type': 'number', 'minimum': 0.0, 'maximum': 1.0},
'width': {'type': 'number', 'minimum': 0.0, 'maximum': 1.0},
'height': {'type': 'number', 'minimum': 0.0, 'maximum': 1.0},
'slice_index': {'type': 'integer'},
'tag': {'type': 'string'},
"""Module responsible for storage of serializers used in Tasks endpoints."""
from flask_restplus import fields
from medtagger.api import api
from medtagger.definitions import LabelTool
out__label_tag = api.model(
'Label Tag model', {
'key':
fields.String(),
'name':
fields.String(),
'actions_ids':
fields.List(fields.Integer(),
attribute=lambda label_tag:
[action.id for action in label_tag.actions]),
'tools':
fields.List(fields.String(),
description='Available tools for Label Tag',
enum=[tool.name for tool in LabelTool],
attribute=lambda label_tag:
[tool.name for tool in label_tag.tools]),
})
in__label_tag = api.model(
'Label Tag model', {
'key':
fields.String(),
'name':
fields.String(),
'actions_ids':
"""Module responsible for storage of serializers used in Auth endpoints."""
from flask_restplus import fields
from medtagger.api import api
new_user = api.model('New user model', {
'email': fields.String(required=True, min_length=1),
'password': fields.String(required=True, min_length=8),
'firstName': fields.String(required=True, min_length=1),
'lastName': fields.String(required=True, min_length=1),
})
sign_in = api.model('Sign in model', {
'email': fields.String(required=True),
'password': fields.String(required=True),
})
"""Module containing serializers for users endpoints."""
from flask_restplus import fields
from medtagger.api import api
user_settings = api.model('User settings', {
'skipTutorial': fields.Boolean(attribute='skip_tutorial', description='Should tutorial be skipped?'),
})
user = api.model('User model', {
'id': fields.Integer(attribute='id', description='User\'s id'),
'email': fields.String(attribute='email', description='Email address'),
'firstName': fields.String(attribute='first_name', description='First name'),
'lastName': fields.String(attribute='last_name', description='Last name'),
'role': fields.String(attribute='role.name', description='User\'s role'),
'settings': fields.Nested(user_settings, attribute='settings', description='User\'s settings'),
})
users_list = api.model('Users list', {
'users': fields.List(fields.Nested(user)),
})
"""Module that contains helpers related to pagination in the REST API."""
from flask_restplus import fields
from medtagger.api import api
PAGINATION = {
'pagination':
fields.Nested(
api.model(
'Pagination', {
'page':
fields.Integer(description='Page number'),
'per_page':
fields.Integer(description='Number of entries per page'),
'total':
fields.Integer(description='Total numer of entries'),
})),
}
"""Module responsible for storage of serializers used in Datasets endpoints."""
from flask_restplus import fields
from medtagger.api import api
from medtagger.api.tasks.serializers import out__task
in__dataset = api.model('New Dataset model', {
'key': fields.String(),
'name': fields.String(),
})
out__dataset = api.model(
'Dataset model', {
'key': fields.String(),
'name': fields.String(),
'tasks': fields.List(fields.Nested(out__task)),
})
"""Module responsible for storage of serializers used in Core endpoints."""
from flask_restplus import fields
from medtagger.api import api
out__status = api.model(
'Status model', {
'success':
fields.Boolean(
description='Should be True if everything is all right.'),
})
