def test_laplacian_smoketest():
rand = np.random.RandomState(42)
X = rand.rand(20, 2)
adj = compute_adjacency_matrix(X, radius=0.5)
aff = compute_affinity_matrix(adj, radius=0.1)
def check_laplacian(method):
lap = compute_laplacian_matrix(aff, method=method)
assert isspmatrix(lap)
assert_equal(lap.shape, (X.shape[0], X.shape[0]))
for method in Laplacian.asymmetric_methods():
yield check_laplacian, method
def test_laplacian_smoketest():
rand = np.random.RandomState(42)
X = rand.rand(20, 2)
adj = compute_adjacency_matrix(X, radius=0.5)
aff = compute_affinity_matrix(adj, radius=0.1)
def check_laplacian(method):
lap = compute_laplacian_matrix(aff, method=method)
assert isspmatrix(lap)
assert_equal(lap.shape, (X.shape[0], X.shape[0]))
for method in Laplacian.asymmetric_methods():
yield check_laplacian, method
def test_laplacian_full_output():
# Test that full_output symmetrized laplacians have the right form
rand = np.random.RandomState(42)
X = rand.rand(20, 2)
def check_symmetric(method, adjacency_radius, affinity_radius):
adj = compute_adjacency_matrix(X, radius=adjacency_radius)
aff = compute_affinity_matrix(adj, radius=affinity_radius)
lap, lapsym, w = compute_laplacian_matrix(aff, method=method,
full_output=True)
sym = w[:, np.newaxis] * (lap.toarray() + np.eye(*lap.shape))
assert_allclose(lapsym.toarray(), sym)
for method in Laplacian.asymmetric_methods():
for adjacency_radius in [0.5, 1.0]:
for affinity_radius in [0.1, 0.3]:
yield check_symmetric, method, adjacency_radius, affinity_radius
def test_laplacian_full_output():
# Test that full_output symmetrized laplacians have the right form
rand = np.random.RandomState(42)
X = rand.rand(20, 2)
def check_symmetric(method, adjacency_radius, affinity_radius):
adj = compute_adjacency_matrix(X, radius=adjacency_radius)
aff = compute_affinity_matrix(adj, radius=affinity_radius)
lap, lapsym, w = compute_laplacian_matrix(aff,
method=method,
full_output=True)
sym = w[:, np.newaxis] * (lap.toarray() + np.eye(*lap.shape))
assert_allclose(lapsym.toarray(), sym)
for method in Laplacian.asymmetric_methods():
for adjacency_radius in [0.5, 1.0]:
for affinity_radius in [0.1, 0.3]:
yield check_symmetric, method, adjacency_radius, affinity_radius