def merge(self):
Utilities.concatenate_files(*Utilities.scan_whole_dir(
os.path.join(self.reference_dir, "nucleotide")),
target_file=self.nfasta)
Utilities.concatenate_files(*Utilities.scan_whole_dir(
os.path.join(self.reference_dir, "protein")),
target_file=self.pfasta)
self.describer.get_index_guide(self.nfasta)
print(
"# Merge completed. \n# Protein FASTA to annotate: '{}'\n".format(
self.pfasta))
def merge(self):
for fasta_type, fasta_file in zip(self._fasta_types, [self.nfasta, self.pfasta]):
source = os.path.join(self.reference_dir, fasta_type)
Utilities.concatenate_files(*Utilities.scan_whole_dir(source), target_file=fasta_file)
self.index_dir = self.describer.get_index_guide(self.nfasta)
print("Merge completed")
