def test_delete_database(sm: SMInstance):
moldb = sm.database(MOLDB_NAME, MOLDB_VERSION)
data = sm.delete_database(moldb.id)
print(data)
assert sm.database(MOLDB_NAME, MOLDB_VERSION) is None
def test_update_database_none(sm: SMInstance):
moldb = sm.database(MOLDB_NAME, MOLDB_VERSION)
data = sm.update_database(moldb.id, is_public=None, archived=None)
print(data)
moldb_updated = sm.database(MOLDB_NAME, MOLDB_VERSION)
assert moldb_updated.is_public == moldb.is_public
assert moldb_updated.archived == moldb.archived
def test_update_database_all(sm: SMInstance):
moldb = sm.database(MOLDB_NAME, MOLDB_VERSION)
new_is_public = not moldb.is_public
new_archived = not moldb.archived
data = sm.update_database(moldb.id,
is_public=new_is_public,
archived=new_archived)
print(data)
moldb_updated = sm.database(MOLDB_NAME, MOLDB_VERSION)
assert moldb_updated.is_public == new_is_public
assert moldb_updated.archived == new_archived
def test_create_database(sm: SMInstance):
with tempfile.NamedTemporaryFile() as fp:
lines = [
b'id\tname\tformula\n',
b'1\t1 - Methylhistidine\tC7H11N3O2\n',
b'2\t13 - Diaminopropane\tC3H10N2\n',
]
fp.writelines(lines)
fp.seek(0)
data = sm.create_database(fp.name, MOLDB_NAME, MOLDB_VERSION)
print(data)
db1 = sm.database(id=data['id'])
db2 = sm.database(MOLDB_NAME, MOLDB_VERSION)
assert db1 and db2
assert db1.id == db2.id
def test_fetch_database(sm: SMInstance):
db = sm.database(name="HMDB", version="v4")
print(db)
assert db is not None