Exemplo n.º 1
0
def mhc_binding_prediction(mutated_regions, alleles):
    if args.random_mhc:
        return mhc_random.generate_scored_epitopes(mutated_regions, alleles)
    elif args.iedb_mhc:
        mhc = IEDB_MHC1(alleles=alleles)
        return mhc.predict(mutated_regions)
    elif args.netmhc_cons:
        predictor = ConsensusBindingPredictor(alleles)
        return predictor.predict(mutated_regions)
    else:
        predictor = PanBindingPredictor(alleles)
        return predictor.predict(mutated_regions)
Exemplo n.º 2
0
Arquivo: ui.py Projeto: xflicsu/immuno 
def score_epitopes_random(transcripts_df, alleles):
    return mhc_random.generate_scored_epitopes(transcripts_df, alleles)