def run(self, *args, **kwargs):
args = ArgumentBuilder(formatter_class=argparse.ArgumentDefaultsHelpFormatter,
description='Convert Notebook to python script') \
.add_work_dir_argument() \
.add_conf_path_argument() \
.add_docstring_conf() \
.add_force_argument() \
.add_argument('-n', '--notebook', type=str, required=True,
help='The notebook to convert') \
.parse(args)
self.set_log_level(args)
conf = self.get_conf(args.working_directory, args.notebook,
args.conf_path)
if not conf.path:
raise MlVToolException('Configuration file is mandatory')
docstring_conf_path = args.docstring_conf or conf.docstring_conf
docstring_conf = load_docstring_conf(
docstring_conf_path) if docstring_conf_path else None
output_script = get_script_output_path(args.notebook, conf)
out_dvc_cmd = get_dvc_cmd_output_path(output_script, conf)
self.check_force(args.force, [output_script, out_dvc_cmd])
export_to_script(args.notebook, output_script, conf)
gen_dvc_command(output_script, out_dvc_cmd, conf, docstring_conf)
def run(self, *args, **kwargs):
args = ArgumentBuilder(formatter_class=argparse.ArgumentDefaultsHelpFormatter,
description='Checks all notebooks and scripts consistency.\n'
'Run the up to date checks on all notebooks from the notebook directory. '
'Script names are deduce from the conf.') \
.add_work_dir_argument() \
.add_conf_path_argument() \
.add_path_argument('-n', '--notebooks-dir', type=str, help='Notebooks directory') \
.add_argument('-i', '--ignore', action='append', help='Notebook filename to ignore', default=[]) \
.parse(args)
self.set_log_level(args)
conf = self.get_conf(args.working_directory, args.notebooks_dir,
args.conf_path)
if not conf.path:
raise MlVToolException('Configuration file is mandatory')
equals = True
for notebook in glob.glob(join(args.notebooks_dir, '*.ipynb')):
if basename(notebook) in args.ignore:
logging.info(f'Ignore notebook {notebook}')
continue
associated_script = get_script_output_path(notebook, conf)
equals = run_consistency_check(notebook, associated_script,
conf) and equals
sys.exit(0 if equals else 1)
def run(self, *args, **kwargs):
args = ArgumentBuilder(formatter_class=argparse.ArgumentDefaultsHelpFormatter,
description='Generate python script wrappers') \
.add_work_dir_argument() \
.add_conf_path_argument() \
.add_force_argument() \
.add_docstring_conf() \
.add_path_argument('-i', '--input-script', type=str, required=True,
help='The python input script') \
.add_path_argument('-o', '--out-dvc-cmd', type=str,
help='Path to the generated bash dvc command') \
.parse(args)
self.set_log_level(args)
conf = self.get_conf(args.working_directory, args.input_script,
args.conf_path)
docstring_conf_path = args.docstring_conf or conf.docstring_conf
if not conf.path and not args.out_dvc_cmd:
raise MlVToolException(
'Parameter --out-dvc-cmd is mandatory if no conf provided')
docstring_conf = load_docstring_conf(
docstring_conf_path) if docstring_conf_path else None
out_dvc_cmd = args.out_dvc_cmd or get_dvc_cmd_output_path(
args.input_script, conf)
self.check_force(args.force, [out_dvc_cmd])
gen_dvc_command(args.input_script, out_dvc_cmd, conf, docstring_conf)
def run(self, *args, **kwargs):
args = ArgumentBuilder(formatter_class=argparse.ArgumentDefaultsHelpFormatter,
description='Checks notebook and script consistency') \
.add_work_dir_argument() \
.add_conf_path_argument() \
.add_path_argument('-n', '--notebook', type=str, help='The notebook to check') \
.add_path_argument('-s', '--script', required=True, type=str, help='The script to check') \
.parse(args)
self.set_log_level(args)
conf = self.get_conf(args.working_directory, args.notebook,
args.conf_path)
equals = run_consistency_check(args.notebook, args.script, conf)
sys.exit(0 if equals else 1)
def run(self, *args, **kwargs):
args = ArgumentBuilder(formatter_class=argparse.ArgumentDefaultsHelpFormatter,
description='Export a DVC pipeline to sequential execution.') \
.add_force_argument() \
.add_work_dir_argument() \
.add_argument('--dvc', type=str, required=True, help='DVC targeted pipeline metadata step') \
.add_argument('-o', '--output', type=str, help='The Python pipeline script output path',
required=True) \
.parse(args)
self.set_log_level(args)
work_dir = args.working_directory
if not args.force and exists(args.output):
raise MlVToolException(
f'Output file {args.output} already exists, use --force option to overwrite it'
)
export_pipeline(args.dvc, args.output, work_dir)
def run(self, *args, **kwargs):
args = ArgumentBuilder(formatter_class=argparse.ArgumentDefaultsHelpFormatter,
description='Convert Notebook to python script') \
.add_work_dir_argument() \
.add_conf_path_argument() \
.add_force_argument() \
.add_path_argument('-n', '--notebook', type=str, required=True,
help='The notebook to convert') \
.add_path_argument('-o', '--output', type=str,
help='The Python script output path') \
.parse(args)
self.set_log_level(args)
conf = self.get_conf(args.working_directory, args.notebook,
args.conf_path)
if not conf.path and not args.output:
raise MlVToolException(
'Parameter --output is mandatory if no conf provided')
output = args.output or get_script_output_path(args.notebook, conf)
self.check_force(args.force, [output])
export_to_script(args.notebook, output, conf)