def _check_load_fold(fold_files, atlas):
_validate_type(fold_files, (list, 'path-like', None), 'fold_files')
if fold_files is None:
fold_files = mne.get_config('MNE_NIRS_FOLD_PATH')
if fold_files is None:
raise ValueError(
'MNE_NIRS_FOLD_PATH not set, either set it using '
'mne.set_config or pass fold_files as str or list')
if not isinstance(fold_files, list): # path-like
fold_files = _check_fname(fold_files,
overwrite='read',
must_exist=True,
name='fold_files',
need_dir=True)
fold_files = [op.join(fold_files, f'10-{x}.xls') for x in (5, 10)]
fold_tbl = pd.DataFrame()
for fi, fname in enumerate(fold_files):
fname = _check_fname(fname,
overwrite='read',
must_exist=True,
name=f'fold_files[{fi}]')
fold_tbl = pd.concat(
[fold_tbl, _read_fold_xls(fname, atlas=atlas)], ignore_index=True)
return fold_tbl
def test_check():
"""Test checking functions."""
pytest.raises(ValueError, check_random_state, 'foo')
pytest.raises(TypeError, _check_fname, 1)
_check_fname(Path('./'))
pytest.raises(IOError, check_fname, 'foo', 'tets-dip.x', (), ('.fif', ))
pytest.raises(ValueError, _check_subject, None, None)
pytest.raises(TypeError, _check_subject, None, 1)
pytest.raises(TypeError, _check_subject, 1, None)
# smoke tests for permitted types
check_random_state(None).choice(1)
check_random_state(0).choice(1)
check_random_state(np.random.RandomState(0)).choice(1)
if check_version('numpy', '1.17'):
check_random_state(np.random.default_rng(0)).choice(1)
# _meg.fif is a valid ending and should not raise an error
shutil.copyfile(fname_raw, fname_raw.replace('_raw.', '_meg.'))
mne.io.read_raw_fif(fname_raw.replace('_raw.', '_meg.'))
def test_check(tmpdir):
"""Test checking functions."""
pytest.raises(ValueError, check_random_state, 'foo')
pytest.raises(TypeError, _check_fname, 1)
_check_fname(Path('./'))
fname = str(tmpdir.join('foo'))
with open(fname, 'wb'):
pass
assert op.isfile(fname)
_check_fname(fname, overwrite='read', must_exist=True)
orig_perms = os.stat(fname).st_mode
os.chmod(fname, 0)
if not sys.platform.startswith('win'):
with pytest.raises(PermissionError, match='read permissions'):
_check_fname(fname, overwrite='read', must_exist=True)
os.chmod(fname, orig_perms)
os.remove(fname)
assert not op.isfile(fname)
pytest.raises(IOError, check_fname, 'foo', 'tets-dip.x', (), ('.fif', ))
pytest.raises(ValueError, _check_subject, None, None)
pytest.raises(TypeError, _check_subject, None, 1)
pytest.raises(TypeError, _check_subject, 1, None)
# smoke tests for permitted types
check_random_state(None).choice(1)
check_random_state(0).choice(1)
check_random_state(np.random.RandomState(0)).choice(1)
if check_version('numpy', '1.17'):
check_random_state(np.random.default_rng(0)).choice(1)
# _meg.fif is a valid ending and should not raise an error
new_fname = str(
tmpdir.join(op.basename(fname_raw).replace('_raw.', '_meg.')))
shutil.copyfile(fname_raw, new_fname)
mne.io.read_raw_fif(new_fname)
def test_check(tmp_path):
"""Test checking functions."""
pytest.raises(ValueError, check_random_state, 'foo')
pytest.raises(TypeError, _check_fname, 1)
_check_fname(Path('./foo'))
fname = tmp_path / 'foo'
with open(fname, 'wb'):
pass
assert op.isfile(fname)
_check_fname(fname, overwrite='read', must_exist=True)
orig_perms = os.stat(fname).st_mode
os.chmod(fname, 0)
if not sys.platform.startswith('win'):
with pytest.raises(PermissionError, match='read permissions'):
_check_fname(fname, overwrite='read', must_exist=True)
os.chmod(fname, orig_perms)
os.remove(fname)
assert not op.isfile(fname)
pytest.raises(IOError, check_fname, 'foo', 'tets-dip.x', (), ('.fif', ))
pytest.raises(ValueError, _check_subject, None, None)
pytest.raises(TypeError, _check_subject, None, 1)
pytest.raises(TypeError, _check_subject, 1, None)
# smoke tests for permitted types
check_random_state(None).choice(1)
check_random_state(0).choice(1)
check_random_state(np.random.RandomState(0)).choice(1)
if check_version('numpy', '1.17'):
check_random_state(np.random.default_rng(0)).choice(1)