Exemplos de read_stc em Python

Exemplo n.º 1

Arquivo: test_source_estimate.py Projeto: mshamalainen/mne-python

def test_io_stc():
    """Test IO for STC files
    """
    stc = read_stc(fname)

    write_stc(op.join(tempdir, "tmp.stc"), stc['tmin'], stc['tstep'],
              stc['vertices'], stc['data'])
    stc2 = read_stc(op.join(tempdir, "tmp.stc"))

    assert_array_almost_equal(stc['data'], stc2['data'])
    assert_array_almost_equal(stc['tmin'], stc2['tmin'])
    assert_array_almost_equal(stc['vertices'], stc2['vertices'])
    assert_array_almost_equal(stc['tstep'], stc2['tstep'])

Exemplo n.º 2

Arquivo: test_stc.py Projeto: slew/mne-python

def test_io_stc():
    """Test IO for STC files
    """
    stc = mne.read_stc(fname)

    mne.write_stc("tmp.stc", stc['tmin'], stc['tstep'],
                             stc['vertices'], stc['data'])
    stc2 = mne.read_stc("tmp.stc")

    assert_array_almost_equal(stc['data'], stc2['data'])
    assert_array_almost_equal(stc['tmin'], stc2['tmin'])
    assert_array_almost_equal(stc['vertices'], stc2['vertices'])
    assert_array_almost_equal(stc['tstep'], stc2['tstep'])

Exemplo n.º 3

def test_io_stc():
    """Test IO for STC files
    """
    stc = read_stc(fname)

    write_stc(op.join(tempdir, "tmp.stc"), stc['tmin'], stc['tstep'],
              stc['vertices'], stc['data'])
    stc2 = read_stc(op.join(tempdir, "tmp.stc"))

    assert_array_almost_equal(stc['data'], stc2['data'])
    assert_array_almost_equal(stc['tmin'], stc2['tmin'])
    assert_array_almost_equal(stc['vertices'], stc2['vertices'])
    assert_array_almost_equal(stc['tstep'], stc2['tstep'])

Exemplo n.º 4

Arquivo: test_source_estimate.py Projeto: emilyruzich/mne-python

def test_io_stc():
    """Test IO for STC files
    """
    stc = mne.read_stc(fname)

    mne.write_stc("tmp.stc", stc['tmin'], stc['tstep'], stc['vertices'],
                  stc['data'])
    stc2 = mne.read_stc("tmp.stc")

    assert_array_almost_equal(stc['data'], stc2['data'])
    assert_array_almost_equal(stc['tmin'], stc2['tmin'])
    assert_array_almost_equal(stc['vertices'], stc2['vertices'])
    assert_array_almost_equal(stc['tstep'], stc2['tstep'])

Exemplo n.º 5

Arquivo: plot_read_stc.py Projeto: arokem/mne-python

reconstructions
"""
# Author: Alexandre Gramfort <*****@*****.**>
#
# License: BSD (3-clause)

print __doc__

import os
import numpy as np
import mne

fname = os.environ['MNE_SAMPLE_DATASET_PATH']
fname += '/MEG/sample/sample_audvis-meg-lh.stc'

stc = mne.read_stc(fname)

n_vertices, n_samples = stc['data'].shape
print "tmin : %s (s)" % stc['tmin']
print "tstep : %s" % stc['tstep']
print "tmax : %s (s)" % (stc['tmin'] + stc['tstep'] * n_samples)
print "stc data size: %s (nb of vertices) x %s (nb of samples)" % (
                                                    n_vertices, n_samples)

# View source activations
times = stc['tmin'] + stc['tstep'] * np.arange(n_samples)
import pylab as pl
pl.plot(times, stc['data'][::100,:].T)
pl.xlabel('time (ms)')
pl.ylabel('Source amplitude')
pl.show()