def begin_generic_unlabelled_step(configs,mockdb,pipeline,step_objects,next_step_key,prev_step_key):
"""
"""
if prev_step_key is None:
next_step_obj = mockdb[translate_underscores_to_capitals(next_step_key)].__new__(configs['system'],pipeline_config=configs["pipeline"],pipeline=pipeline)
else:
next_step_obj = mockdb[translate_underscores_to_capitals(next_step_key)].__new__(configs['system'],pipeline_config=configs["pipeline"],pipeline=pipeline,prev_step=step_objects[prev_step_key])
if configs["system"].get("Logging","debug") is "True":
print " "+translate_underscores_to_capitals(next_step_key)+": " + str(next_step_obj.key)
setattr(pipeline,next_step_key+"_key",next_step_obj.key)
next_step_obj.__fill_qsub_file__(configs)
if configs["system"].get("Logging","debug") is "True":
print("Qsub file should be filled in "+next_step_obj.qsub_file)
next_step_obj.__launch__(configs['system'])
return next_step_obj
def __get_step_obj__(self,system_config,mockdb,step):
"""Returns the database object corresponding to the given step and key."""
step_key = self.__get_step_key__(step)
if step_key == None:
return None
return mockdb[translate_underscores_to_capitals(step)].__get__(system_config,int(getattr(self,step+"_key")))
