import cherrypy
import operator, os, pickle, sys
from genshi.template import TemplateLoader
from formencode import Invalid
from genshi.filters import HTMLFormFiller
from Digest import Digest
import model
current_dir = os.path.dirname(os.path.abspath(__file__))
enzymelist = model.enzymes()
loader = TemplateLoader(
os.path.join(os.path.dirname(__file__), 'web'),
auto_reload=True
)
#enzyme_name = ['Arg-C proteinase', 'Asp-N endopeptidase', 'BNPS-Skatole', 'Caspase1', 'Caspase2', 'Caspase3', 'Caspase4', 'Caspase5', 'Caspase6', 'Caspase7', 'Caspase8', 'Caspase9', 'Caspase10', 'Clostripain(Clostridiopeptidase B', 'CNBr', 'Enterokinase', 'Factor Xa', 'Formic acid', 'Glutamyl endopeptidase', 'GranzymeB', 'Hydroxylamine', 'Iodosobenzoic acid', 'LysC', 'Neutrophil elastase', 'NTCB(2-nitro-5-thiocyanobenzoic acid)', 'Pepsin(pH>2)', 'Proline-endopeptidase', 'Proteinase K', 'Staphylococcal peptidase I', 'Thermolysin']
enzyme_name = []
for i in enzymelist.enzyme:
enzyme_name.append(i[0])
enzyme_id = list(range(len(enzyme_name)))
enzyme_list = zip(enzyme_name,enzyme_id)
#print enzymelist.enzyme
digest = Digest(enzymelist.enzyme)
class ProteinDigest:
output_num.append(temp)
temp = []
for j in range(i,i+6):
temp.append(result_seq[j])
output_seq.append(temp)
temp = []
for j in range((len(result_seq)-1)/6 *6,len(result_seq)):
temp.append(result_num[j])
output_num.append(temp)
temp = []
for j in range((len(result_seq)-1)/6 *6,len(result_seq)):
temp.append(result_seq[j])
output_seq.append(temp)
output = []
for i in range(len(output_num)):
output.append(output_num[i])
output.append(output_seq[i])
return output
# for test
if __name__ == '__main__':
import model
el = model.enzymes()
chosen = []
#s = 'qweaaaadssss22aaaadssss333aaaadssss44waaaadssssr'
s = raw_input()
o = Digest(el.enzyme)
o.selectenzyme(allselect=True)
a = o.digest(s.upper())