def alignment(self, p_gi, a_gi):
"""Return the Alignments object"""
p = Protein.byGi(p_gi)
a = None
for i in p.hits:
if i.alignment_protein.gi == (a_gi):
a = i
if a.query_protein.organism == 1:
q_org = "Drosophila melanogaster"
else:
q_org = "Saccaromyces cervisiae"
if a.alignment_protein.organism == 1:
a_org = "Drosophila melanogaster"
else:
a_org = "Saccaromyces cervisiae"
title = "Alignment: " + a_gi + "and" + p_gi
return dict(title=title, alignment=a, alignment_organism=a_org, query_organism=q_org)
