def dispense_drug_patient (self, message, first, last, gender, age, code, quantity):
age = Patient.age_from_str(age)
gender = Patient.SEXE_MALE if gender.upper() == 'M' else Patient.SEXE_FEMALE
receiver= Patient(first_name=first, last_name=last, sexe=gender,age=age)
receiver.save()
sender = StoreProvider.cls().by_mobile(message.peer)
item = Item.by_code(code)
if item == None or sender == None or receiver == None:
message.respond(_(u"Dispense request failed. Either Item ID or Patient datas are wrong."))
return True
try:
log = transfer_item(sender=sender, receiver=receiver, item=item, quantity=int(quantity))
except ItemNotInStore:
message.respond(_(u"Dispense request failed. You do not have %(med)s") % {'med': item})
return True
except NotEnoughItemInStock:
message.respond(_(u"Dispense request failed. You can't dispense %(q)s %(it)s to %(rec)s because you only have %(stk)s.") % {'q': quantity, 'it': item.name, 'rec': receiver.display_full(), 'stk': StockItem.objects.get(peer=sender, item=item).quantity})
return True
message.respond("CONFIRMATION #%(d)s-%(sid)s-%(rid)s-%(lid)s You have dispensed %(quantity)s %(item)s to %(receiver)s. If not correct please reply: CANCEL %(lid)s" % {
'quantity': quantity,
'item': item.name,
'receiver': receiver.display_full(),
'd': log.date.strftime("%d%m%y"),
'sid': sender.id,
'rid': receiver.id,
'lid': log.id
})
return True
def signup(request):
"""
Sign Up Page, uses built in Sign-Up
"""
if request.method == 'POST':
form = SignUpForm(request.POST)
if form.is_valid():
form.save()
username = form.cleaned_data.get('username')
raw_password = form.cleaned_data.get('password1')
name = form.cleaned_data.get('name')
category = form.cleaned_data.get('category')
user = authenticate(username=username, password=raw_password)
if category == "doctor":
doctor = Doctor(user=user, name=name)
doctor.save()
if category == "pharmacist":
pharmacist = Pharmacist(user=user, name=name)
pharmacist.save()
if category == "patient":
patient = Patient(user=user, name=name)
patient.save()
login(request, user)
return redirect('/pharm/profile')
else:
form = SignUpForm()
return render(request, 'pharmeasyflow/signup.html', {'form': form})
def patients():
query = Patient.query.join(Department.patients).filter(
Department.department_name == request.cookies.get('department', 'default'))
if request.method == "GET":
offset = int(request.args.get('offset', 0))
limit = int(request.args.get('limit', 100))
return make_response((json.dumps([
p.serialize() for p in query
.order_by(desc(Patient.latest_checkin_time))
.offset(offset)
.limit(limit)
.all()
]), 200, {"Content-Type": "application/json"}))
elif request.method == "POST":
patient_data = json.loads(request.data)
patient = Patient(**patient_data)
patient = db.merge(patient)
db.commit()
department = Department.query.filter_by(
department_name=request.cookies.get('department', 'default')).first()
if department:
patient.departments.append(department)
db.commit()
if 'checkin' in patient_data:
add_checkin(patient.nhi, patient_data['checkin'])
return jsonify(patient.serialize())
def add_patient(patient_id):
from forms import PatientForm
if patient_id:
id = int(patient_id.replace('P00', '').replace(
'P0', '').replace('P', ''))
patient = Patient.query.get(id)
else:
patient = Patient()
form = PatientForm(obj=patient)
if form.validate_on_submit():
if 'photo' not in request.files:
flash('No file part')
return redirect(request.url)
file = request.files['photo']
# if user does not select file, browser also
# submit an empty part without filename
if file.filename == '':
flash('No selected file')
return redirect(request.url)
if file and allowed_file(file.filename):
filename = uuid.uuid4().hex+'.' + \
secure_filename(file.filename).split('.')[-1].lower()
form.photo.data.save(os.path.join(
app.config['UPLOAD_FOLDER'], 'patients', filename))
form.populate_obj(patient)
patient.photo = filename
patient.gender = Gender(form.gender.data)
db.session.add(patient)
db.session.commit()
url = url_for('patient_profile', patient_id=repr(patient))
flash(
'Patient saved with ID: {}, <a href="{}">view patient profile</a>'.format(repr(patient), url))
return redirect(url_for('add_patient'))
return render_template('add-patient.html', form=form)
def add_patient(request):
if request.method == 'POST':
print request.POST
firstname = request.POST.get('firstname')
print firstname
lastname = request.POST.get('lastname')
age = request.POST.get('age')
dob = request.POST.get('dob')
gender = request.POST.get('gender')
phone = request.POST.get('phone')
description = request.POST.get('description')
response_data = {}
patient = Patient(firstname=firstname,
lastname=lastname,
age=age,
dob=dob,
gender=gender,
phone=phone,
description=description)
patient.save()
response_data['result'] = 'Data stored successfully!'
return HttpResponse(json.dumps(response_data),
content_type="application/json")
else:
return HttpResponse(json.dumps(
{"nothing to see": "this isn't happening"}),
content_type="application/json")
def clean(self, request):
self.cleaned_data = {}
if 'Add' in request.POST:
for fieldname in self.fields:
if self.fields[fieldname].required and fieldname not in request.POST:
messages.error(request, u'Для добавления нужно дополнить данные')
self.patients = Patient.objects.all()
return False
else:
if fieldname in request.POST:
self.cleaned_data[fieldname] = request.POST[fieldname]
try:
bd = datetime.strptime(self.cleaned_data['birthdate'], '%Y-%m-%d').date()
except:
self.patients = Patient.objects.all()
return False
user = User.objects.create_user(username=self.cleaned_data['polis_number'])
user.set_password(self.cleaned_data['password'])
user.groups = Group.objects.filter(id=3)
user.save()
p = Patient(fio=self.cleaned_data['fio'], birthdate=bd,
address=self.cleaned_data['address'], phone_number=int(self.cleaned_data['phone_number']),
area=Area.objects.get(number=self.cleaned_data['area']),
polis_number=self.cleaned_data['polis_number'], user=user, password=self.cleaned_data['password'])
p.save()
messages.info(request, u'Пациент добавлен')
self.patients = Patient.objects.all()
self.patients = Patient.objects.all()
return True
def create_patient():
patient_data = json.loads(request.data)
doctor = Doctor.query.get(patient_data['doctor_id'])
if not doctor:
return jsonify({
"success": False,
"description": "doctor id not found"
}), 404
patient = Patient(
name=patient_data["name"],
age=patient_data["age"],
address=patient_data["address"],
email=patient_data["email"],
examine_report=patient_data["examine_report"],
)
patient.doctor = doctor
try:
patient.insert()
except IntegrityError as err:
print(err)
return jsonify({
"success": False,
"description": "there is patient with the same email"
}), 200
except Exception as err:
# print(err)
return jsonify({"success": False, "error": str(err)}), 500
return jsonify({
"success": True,
"patient": Patient.query.get(patient.id).format()
}), 200
def patient_all():
if request.method == "GET":
records = Patient.select()
return template("index.html", items=records)
elif request.method == "POST":
json = request.POST
# check to see if request has provided all necessary values to create object
#
name = json["pname"]
surname = json["surname"]
dob = json["dob"]
gp = GP[app.config["user_id"]]
status = True
city = json["city"]
district = json["district"]
address = Address(cityName=city,
districtName=district,
districtCode="fix this")
patient = Patient(name=name,
sex="fix this",
dob=dob,
address=address,
gp=gp,
status=status)
#save progress
db.commit()
#redirect to the newly created patient's page
redirect("/patient/{}".format(patient.id))
elif request.method == "DELETE":
patient_id = request.POST.id.strip()
try:
patient = Patient[patient_id]
except:
return "Patient does not exist"
patient.delete()
elif request.method == "PUT":
json = request.POST
update = json["update"]
value = json["value"]
id = json["id"]
with db_session():
try:
patient = Patient[id]
except:
return {"message": 'patient not found'}
setattr(patient, update, value)
return {"message": "patient updated"}
return {"message": "missing token"}
def _parse_patients(self, records):
if not isinstance(records, list):
name, patient_id, patronymic, surname, gender, birth_date, mobile_number, place, address = records
return Patient(name, patient_id, patronymic, surname, gender,
birth_date, mobile_number, place, address)
for i in range(len(records)):
name, patient_id, patronymic, surname, gender, birth_date, mobile_number, place, address = records[
i]
records[i] = Patient(name, patient_id, patronymic, surname, gender,
birth_date, mobile_number, place, address)
return records
def drop_all_data(session):
from models import Patient, Encounter, Observation, Procedure
Patient.clear_all_records(session)
Encounter.clear_all_records(session)
Observation.clear_all_records(session)
Procedure.clear_all_records(session)
session.execute(f"DROP INDEX IF EXISTS {Patient.SRC_INDEX}")
session.execute(f"DROP INDEX IF EXISTS {Encounter.SRC_INDEX}")
session.commit()
def test_descriptors(self):
with self.assertRaises(ValueError):
patient = Patient(mobile='07894565434581')
with self.assertRaises(TypeError):
patient = Patient(id='Nathan')
with self.assertRaises(TypeError):
patient = Patient(name=1000)
with self.assertRaises(ValueError):
patient = Patient(name='Abiira Nathan of Uganda')
def add_patient(self, ccd_file, pref_email):
#Because of a chicken-egg problem, we need to write the CCDA to disk then have bluebutton parse it before we can
#pass it to a model
with NamedTemporaryFile(delete=False) as xml_file:
for chunk in ccd_file.chunks():
xml_file.write(chunk)
ccda = parse_ccda(xml_file.name)
new_user = User.objects.create_user(pref_email, pref_email, 'password')
new_user.first_name = ccda['demographics']['name']['given'][0]
new_user.last_name = ccda['demographics']['name']['family']
new_user.save()
new_patient = Patient(user=new_user, chart=ccd_file)
new_patient.save()
def add_patient(self, ccd_file, pref_email):
#Because of a chicken-egg problem, we need to write the CCDA to disk then have bluebutton parse it before we can
#pass it to a model
with NamedTemporaryFile(delete=False) as xml_file:
for chunk in ccd_file.chunks():
xml_file.write(chunk)
ccda = parse_ccda(xml_file.name)
new_user = User.objects.create_user(pref_email, pref_email, 'password')
new_user.first_name = ccda['demographics']['name']['given'][0]
new_user.last_name = ccda['demographics']['name']['family']
new_user.save()
new_patient = Patient(user=new_user, chart=ccd_file)
new_patient.save()
def create_patient():
content = request.get_json(silent=True)
session = DBSession()
session.expire_on_commit = False
patient = Patient()
if content and ("mac_address" in content):
patient.mac_address = content["mac_address"].upper()
stmt = session.add(patient)
print(patient.id)
session.commit()
id = patient.id
print(patient.id)
session.close()
return jsonify(patient.id)
def test_patients(_db):
# json, create & update time
now = datetime.datetime.utcnow()
pat = Patient.from_json({
"firstName": "Rick",
"lastName": "Deckard",
"dateOfBirth": "2094-02-01",
"externalId": "5"
})
assert pat.id is None
_db.session.add(pat)
_db.session.commit()
assert pat.id > 0
assert pat.created >= now
mod_time = datetime.datetime.utcnow()
pat.first_name += " Junior"
_db.session.commit()
assert pat.updated >= mod_time
assert pat.to_json() == {
"firstName": "Rick Junior",
"lastName": "Deckard",
"dateOfBirth": "2094-02-01",
"externalId": "5"
}
def index():
form = PatientForm()
patients = Patient.query.all()
#
# if form.refresh.data:
# flash(u'Làm sạch thông tin OK')
if form.view_all.data:
patients = Patient.query.all()
elif form.add_new.data:
if form.validate_on_submit():
new_patient = Patient(form.patient_name.data,
form.patient_phone.data,
form.patient_age.data,
form.patient_gender.data,
form.patient_address.data,
form.patient_history.data,
form.patient_family_history.data)
db.session.add(new_patient)
db.session.commit()
# patients = [new_patient]
flash(u'Thêm mới thành công:' + form.patient_name.data)
else:
flash(u"Error: Vui lòng điền thông tin")
elif form.update.data:
if form.validate_on_submit():
updated_patient = models.Patient.query.filter_by(id=int(form.patient_id.data)).first()
updated_patient.patient_name = form.patient_name.data
updated_patient.patient_phone = form.patient_phone.data
updated_patient.patient_age = form.patient_age.data
updated_patient.patient_gender = form.patient_gender.data
updated_patient.patient_address = form.patient_address.data
updated_patient.patient_history = form.patient_history.data
updated_patient.patient_family_history = form.patient_family_history.data
db.session.commit()
# patients = [updated_patient]
flash(u'Cập nhật thành công: ' + form.patient_name.data)
else:
flash(u"Error: Vui lòng điền thông tin")
elif form.delete.data:
if form.validate_on_submit():
delete_patient = models.Patient.query.filter_by(id=int(form.patient_id.data)).first()
db.session.delete(delete_patient)
db.session.commit()
patients = [delete_patient]
flash(u'Xóa thành công:' + form.patient_name.data)
else:
flash(u"Error: Vui lòng điền thông tin")
return render_template('index.html',
form=form,
patients=patients)
def deserialize(self, session):
race_ext, ethnicity_ext = None, None
for ext in self.raw_data.get("extension", []):
if (
ext["url"]
== "http://hl7.org/fhir/us/core/StructureDefinition/us-core-race"
):
race_ext = ext
if (
ext["url"]
== "http://hl7.org/fhir/us/core/StructureDefinition/us-core-ethnicity"
):
ethnicity_ext = ext
return Patient(
source_id=self.raw_data["id"],
birth_date=self.raw_data["birthDate"],
gender=self.raw_data["gender"],
country=self.raw_data["address"][0]["country"]
if "address" in self.raw_data and "country" in self.raw_data["address"][0]
else None,
race_code=race_ext["valueCodeableConcept"]["coding"][0]["code"]
if race_ext
else None,
race_code_system=race_ext["valueCodeableConcept"]["coding"][0]["system"]
if race_ext
else None,
ethnicity_code=ethnicity_ext["valueCodeableConcept"]["coding"][0]["code"]
if ethnicity_ext
else None,
ethnicity_code_system=ethnicity_ext["valueCodeableConcept"]["coding"][0][
"system"
]
if ethnicity_ext
else None,
)
def importDatabase(filename, user):
'''Imports the uploaded excel file to the database than deletes the excel file
'''
df = pd.read_excel(
os.path.join(current_app.config['UPLOAD_FOLDER'], filename))
user_id = _request_ctx_stack.top.current_user.get('sub')
classifier = Classifier.query.filter_by(user_id=user_id).first()
rows = df.shape[1]
for index, row in df.iterrows():
new_patient = Patient(user_id=user,
status="undiag",
diagnose=str(row[row.size - 1]))
for idx, r in enumerate(row):
if (idx != row.size - 1):
feature = Feature(featureName=df.columns[idx],
featureValue=str(r),
classifier_id=classifier.id)
new_patient.features.append(feature)
db.session.add(new_patient)
db.session.commit()
r = Feature.query.with_entities(
Feature.featureName).filter_by(classifier_id=classifier.id).distinct()
classifier.numberOfFeatureTypes = r.count()
db.session.add(classifier)
db.session.commit()
os.remove(os.path.join(current_app.config['UPLOAD_FOLDER'], filename))
def read_all(m: Type[M], **kwargs) -> List[M]:
"""
Queries the database for all Patients and Reaedings
:param m: Type of the model to query for
:param kwargs: Keyword arguments mapping column names to values to parameterize the
query (e.g., ``patientId="abc"``)
:return: A list of models from the database
"""
# relates to api/android/patients
if m.schema() == Patient.schema():
if not kwargs:
# get all the patients
patient_list = read_all_patients_db()
# get all reading + referral + followup
reading_list = read_all_readings_db(True, None)
# O(n+m) loop. *Requires* patients and readings to be sorted by patientId
readingIdx = 0
for p in patient_list:
while (readingIdx < len(reading_list)
and reading_list[readingIdx]["patientId"]
== p["patientId"]):
p["readings"].append(reading_list[readingIdx])
readingIdx += 1
return patient_list
return m.query.filter_by(**kwargs).all()
else:
if not kwargs:
return m.query.all()
return m.query.filter_by(**kwargs).all()
def add(self, contract_id, clinic_id):
contract = Contract.query.filter_by(id=contract_id).first()
if not contract:
patient_info = self.medsenger_api.get_patient_info(contract_id)
try:
patient_id = int(patient_info['id'])
except:
raise Exception("No patient info, contract_id = {}".format(contract_id))
patient = Patient.query.filter_by(id=patient_id).first()
if not patient:
patient = Patient(id=patient_id)
self.db.session.add(patient)
contract = Contract(id=contract_id, patient_id=patient.id, clinic_id=clinic_id)
self.db.session.add(contract)
contract.is_active = True
contract.clinic_id = clinic_id
contract.agent_token = self.medsenger_api.get_agent_token(contract_id).get('agent_token')
self.__commit__()
return contract
def new_post():
if (current_user.role != 'desk'):
return render_template('auth/accessDenied.html')
if request.method == 'POST':
patient_ssnId = request.form['ssnId']
patient_name = request.form['name']
patient_age = request.form['age']
patient_admissionDate = request.form['admissionDate']
patient_bedType = request.form['bedType']
patient_address = request.form['address']
patient_city = request.form['city']
patient_state = request.form['state']
newPatient = Patient(ssnId=patient_ssnId,
name=patient_name,
age=patient_age,
admissionDate=patient_admissionDate,
bedType=patient_bedType,
address=patient_address,
city=patient_city,
state=patient_state)
db.session.add(newPatient)
db.session.commit()
flash('Patient created')
return redirect('/patients')
else:
return render_template('deskExec/newPatient.html')
def importDatabase(filename, user):
'''Imports the uploaded excel file to the database than deletes the excel file
'''
df = pd.read_excel(
os.path.join(current_app.config['UPLOAD_FOLDER'], filename))
for index, row in df.iterrows():
new_patient = Patient(user_id=user,
status="undiag",
diagnose=str(row[3]))
featureA = Feature(featureName='A',
featureValue=str(row[0]),
classifier_id=1)
featureB = Feature(featureName='B',
featureValue=str(row[1]),
classifier_id=1)
featureC = Feature(featureName='C',
featureValue=str(row[2]),
classifier_id=1)
new_patient.features.append(featureA)
new_patient.features.append(featureB)
new_patient.features.append(featureC)
db.session.add(new_patient)
db.session.commit()
os.remove(os.path.join(current_app.config['UPLOAD_FOLDER'], filename))
def registration_details():
"""Remember to specify login required for only Secretaries."""
if request.method == 'POST':
first_name = request.form['first_name']
last_name = request.form['last_name']
dob = request.form['dob']
street = request.form['street']
town = request.form['town']
parish = request.form['parish']
phone_num = request.form['phone_num']
patient_id = str(uuid.uuid4().fields[-1])[:8]
flash('Paient Registerd')
patient = Patient(id=patient_id,
dob=dob,
first_name=first_name,
last_name=last_name,
street=street,
town=town,
parish=parish,
phone_num=phone_num)
db.session.add(patient)
db.session.commit()
return redirect(url_for('home'))
"""Render the website's registration_details page."""
return render_template('registration_details.html')
def read_all_admin_view(m: Type[M], **kwargs) -> List[M]:
"""
Queries the database for all Patients or Referrals
:param m: Type of the model to query for
:param kwargs: limit, page, search, sortBy, sortDir
:return: A list of models from the database
"""
search_param = (None if kwargs.get("search", None) == "" else kwargs.get(
"search", None))
sql_str = SQL.get_sql_string(search_param, **kwargs)
sql_str_table = SQL.get_sql_table_operations(m)
if m.schema() == Patient.schema():
if search_param is not None:
return db_session.execute(sql_str_table + sql_str)
else:
return db_session.execute(sql_str_table + sql_str)
if m.schema() == Referral.schema():
if search_param is not None:
return db_session.execute(sql_str_table + sql_str)
else:
return db_session.execute(sql_str_table + sql_str)
def create_edited_patient(hospital_id,patient_id):
query = db.select(Patient).where(Patient.id==patient_id)
patient = db.session.execute(query).first()[0]
updated_patient = Patient(patient_id, patient.name,
patient.surname,
patient.dni,
patient.hospital_id)
return render_template("edit.html",hospital=hospital_id, patient= updated_patient)
def putItem(self, PatientName):
PatientId = "p-" + uuid.uuid4().hex
info = {
DATASTORE_COLUMN_PATIENT_ID: PatientId,
DATASTORE_COLUMN_PATIENT_NAME: PatientName
}
Patient().createPatient(info)
return PatientId
def populate_database(num_patients, min_checkins, max_checkins):
"""
Generates a number of Patients and a number of CheckIns per patient and
stores them in the database.
Arguments
num_patients -- the number of patients to generate
min_checkins -- the minimum number of CheckIns to generate per Patient
max_checkins -- the maximum number of CheckIns to generate per Patient
"""
departments = [
Department(department_name="Cardiology"),
Department(department_name="Emergency"),
Department(department_name="Gynecology"),
Department(department_name="Pediatrics"),
Department(department_name="Obstetrics"),
Department(department_name="Oncology"),
Department(department_name="Orthopedics"),
Department(department_name="Neurology")
]
for i in xrange(num_patients):
patient = Patient(**generate_patient())
patient.departments.append(choice(departments))
db.add(patient)
for j in xrange(randrange(min_checkins, max_checkins)):
checkin = CheckIn(**generate_checkin())
checkin.patient_nhi = patient.nhi
lci = patient.latest_checkin_time
vid = checkin.checkin_time
lci = vid if lci is None or vid > lci else lci
patient.latest_checkin_time = lci
db.add(checkin)
for k in xrange(randrange(0, 3)):
appointment = Appointment(**generate_appointment())
appointment.patient_nhi = patient.nhi
db.add(appointment)
db.commit()
def save_patient(patient_data, user):
patient = Patient(
id=patient_data['id'],
first_name=patient_data['first_name'],
last_name=patient_data['last_name'],
email=patient_data['email'],
birthday=patient_data['date_of_birth'],
doctor=user.doctor
)
if Patient.objects.filter(pk=patient_data['id']).exists():
patient.save(
update_fields=['first_name', 'last_name', 'email', 'birthday']
)
else:
patient.save()
return patient
def handle_patient():
"""
Create person and retrieve all users
"""
# POST request
if request.method == 'POST':
body = request.get_json()
if body is None:
raise APIException(
"You need to specify the request body as a json object",
status_code=400)
if ('first_name' not in body or 'last_name' not in body
or 'date' not in body or 'birth_date' not in body
or 'gender' not in body or 'address' not in body
or 'email' not in body or 'phone_number' not in body
or 'id_number' not in body):
raise APIException('Please check your input', status_code=400)
print(body['date'])
user1 = Patient(date=datetime.strptime(body['date'], "%m-%d-%Y"),
first_name=body['first_name'],
last_name=body['last_name'],
birth_date=datetime.strptime(body['birth_date'],
"%m-%d-%Y"),
gender=body['gender'],
address=body['address'],
email=body['email'],
phone_number=body['phone_number'],
id_number=body['id_number'],
doctor_id=get_jwt_identity())
try:
db.session.add(user1)
db.session.commit()
return jsonify(user1.serialize()), 201
except Exception as error:
db.session.rollback()
print(error)
return "bad request", 400
# GET request
if request.method == 'GET':
all_people = Patient.query.filter_by(
doctor_id=get_jwt_identity()).all()
all_people = list(map(lambda x: x.serialize(), all_people))
return jsonify(all_people), 200
return "Invalid Method", 404
def create_patient():
'Api end-point for creating a new user'
if not request.form:
return ''
db.session.add(Patient(**request.form))
db.session.commit()
p = db.session.query(Patient).order_by(Patient.patient_id.desc()).first()
url = url_for('patients.view_patient', patient_id=p.patient_id)
return redirect(url, code=302)
def _get_all_patients(self):
url = 'https://drchrono.com/api/patients'
# Fetch the objects one "page" at a time until they are all loaded
while url:
data = requests.get(url, headers=self.headers).json()
for item in data['results']:
Patient().save_from_dict(item)
url = data['next'] # Value = None on the last page
def create_patient(user_data):
user = Patient(
first_name = user_data["first_name"],
last_name = user_data["last_name"],
email = user_data["email"],
phone_number = user_data["phone_number"],
password_hash = create_password_hash( user_data["password"] )
)
return user
def test_patient_model(self):
"""Does basic model work?"""
p = Patient(first_name="Nonkoff",
last_name="Jegrold",
date_of_birth=datetime.date(1999, 1, 19))
db.session.add(p)
db.session.commit()
"""Doctor should have no patients & no medications"""
self.assertEqual(len(p.medications), 0)
self.assertEqual(len(p.medications_given), 0)
def _get_patient(self, mongo_patient):
cancer_images = self._get_cancer_images(mongo_patient)
return Patient(id=str(mongo_patient["_id"]),
name=mongo_patient["name"],
image=mongo_patient["image"],
is_diagnosed=mongo_patient["is_diagnosed"],
has_cancer=mongo_patient["has_cancer"],
registration_date=mongo_patient["registration_date"],
diagnosis_date=mongo_patient["diagnosis_date"],
cancer_images=cancer_images)
def setUp(self):
"""Create test client, add sample data."""
db.drop_all()
db.create_all()
d1 = Doctor(first_name="John", last_name="Fulcan")
d2 = Doctor(first_name="Mike", last_name="NightRider")
db.session.add(d1)
db.session.add(d2)
p1 = Patient(first_name="Blub",
last_name="Booper",
date_of_birth=datetime.date(1999, 1, 19))
p2 = Patient(first_name="Jak",
last_name="Alomaty",
date_of_birth=datetime.date(2001, 3, 21))
db.session.add(p1)
db.session.add(p2)
n1 = Nurse(first_name='Marko', last_name="jamie")
n2 = Nurse(first_name='Jimbo', last_name="Kilayin")
db.session.add(n1)
db.session.add(n2)
db.session.commit()
d1 = Doctor.query.get(1)
d2 = Doctor.query.get(2)
p1 = Patient.query.get(1)
p2 = Patient.query.get(2)
self.d1 = d1
self.d2 = d2
self.p1 = p1
self.p2 = p2
self.n1 = n1
self.n2 = n2
self.client = app.test_client()
def register_patient(unregistered_patient: UnregisteredPatient):
"""Register patient and returns saved record."""
vaccination_delay = timedelta(days=len([letter for letter
in unregistered_patient.name + unregistered_patient.surname
if letter.isalpha()]))
patient = Patient(name=unregistered_patient.name, surname=unregistered_patient.surname,
id=len(app.patients) + 1,
vaccination_date=(date.today() + vaccination_delay))
app.patients.append(patient)
logger.info(f'Added {patient=}')
return patient
def submit(request):
from models import id_generator
postKeyReturn = check_post_key(request)
if postKeyReturn is not True:
return postKeyReturn
# Because the post is not indexed we have to check the key
if len(unicode(request.body)) == 0:
return HttpResponseBadRequest()
# Check if it really json
try:
json_object = json.loads(unicode(request.body))
except ValueError as e:
print e # TODO: use real logging
# The json is not valid
return HttpResponseBadRequest()
pat = Patient()
uid = id_generator()
# Check if the uid exists
while Patient.objects.filter(uid__iexact=uid).count() == 1:
uid = id_generator()
pat.uid = uid
pat.first_name = json_object.get("first_name") or None
pat.last_name = json_object.get("last_name") or None
pat.moh_id = json_object.get("moh_id") or None
pat.enter_number = json_object.get("enter_number") or None
pat.caregiver_number = json_object.get("caregiver_number") or None
pat.json = unicode(json_object)
# Message is sent through the save method
pat.save()
return HttpResponse(uid)
def populate_database(num_patients, min_vital_infos, max_vital_infos):
"""
Generates a number of Patients and a number of VitalInfos per patient and
stores them in the database.
Arguments
num_patients -- the number of patients to generate
min_vital_infos -- the minimum number of VitalInfos to generate per Patient
max_vital_infos -- the maximum number of VitalInfos to generate per Patient
"""
departments = [
Department(department_name="Cardiology"),
Department(department_name="Emergency"),
Department(department_name="Gynecology"),
Department(department_name="Pediatrics"),
Department(department_name="Obstetrics"),
Department(department_name="Oncology"),
Department(department_name="Orthopedics"),
Department(department_name="Neurology")
]
for i in xrange(num_patients):
patient = Patient(**generate_patient())
patient.departments.append(choice(departments))
db.add(patient)
db.commit()
for j in xrange(randrange(min_vital_infos, max_vital_infos)):
vitalinfo = VitalInfo(**generate_vital_info())
vitalinfo.patient_nhi = patient.nhi
lci = patient.latest_check_in
vid = vitalinfo.check_in_time
lci = vid if lci is None or vid > lci else lci
patient.latest_check_in = lci
db.add(vitalinfo)
db.commit()
def remove(self,event):
remove_dial = wx.MessageDialog(None, u'Tem certeza que deseja excluir este paciente?', 'Sair',
wx.YES_NO | wx.NO_DEFAULT | wx.ICON_QUESTION)
ret = remove_dial.ShowModal()
if ret == wx.ID_YES:
patient1 = Patient.get_by(id=int(self.idTextCtrl.GetValue()))
patient1.delete()
session.commit()
remove_dial.Destroy()
self.refreshIndex(None)
self.getNext(None)
else:
event.Veto()
def handle_uploaded_file(f):
file_name = f.name
file_size = f.size
result = 'Success'
first_line = True
all_patients = Patient.objects.all()
for line in f:
# The first line of the file will always be headers
if not first_line:
# The data will always be separated by tabs
split = line.split('\t')
if len(split) == 14:
patient_id = split[0]
for p in all_patients:
if p.id == patient_id:
p.delete()
patient = Patient(id=patient_id, height=get_value(split[1]),
egplandt=get_date(split[2]),
egpregdt=get_date(split[3]),
egstage4dt=get_date(split[4]),
egcd4dt=get_date(split[5]),
egcd4v=get_value(split[6]),
edate=get_date(split[7]),
egweight=get_value(split[8]),
enroldt=get_date(split[9]),
lastdt=get_date(split[10]),
returndt=get_date(split[11]),
startdt=get_date(split[12]),
startgprg=trim(split[13]))
#TODO: there will be one more field coming
patient.save()
else:
result = 'At least one line of the file did not have the correct number of entries and was not added'
else:
first_line = False
return result
def new_patient():
name = request.json.get('name')
surname = request.json.get('surname')
patronymic = request.json.get('patronymic')
email = request.json.get('email')
phone = request.json.get('phone')
try:
patient = Patient.query.filter_by(email=email).first()
if patient is None:
patient = Patient.from_json({ 'name': name,
'surname': surname,
'patronymic': patronymic,
'email': email,
'phone': phone})
db.session.add(patient)
db.session.commit()
return jsonify({'patient_id': patient.to_json().get('patient_id')}), 201
except:
return '', 500
def get_patient_for_user(appt, user, access_token):
patient = appt['patient']
p = None
try:
p = Patient.objects.get(drchrono_id=patient)
except Patient.DoesNotExist:
patient_uri = drchrono_base_url + patients_url + '/' + str(patient)
patient_data = requests.get(
patient_uri,
headers={'Authorization': 'Bearer %s' % access_token}
).json()
p = Patient()
p.drchrono_id = patient
p.first_name = patient_data.get('first_name')
p.last_name = patient_data.get('last_name')
p.email = patient_data.get('email')
p.gender = patient_data.get('gender')
p.race = patient_data.get('race')
p.photo = patient_data.get('photo')
p.drchrono_doctor_id = patient_data.get('doctor')
p.user_id = user.id
p.save()
return p
def add(req):
patient = Patient()
patient.setReq(req.POST)
patient.save()
def save(self,event):
if self.idTextCtrl.GetValue() != '':
if self.valida(int(self.idTextCtrl.GetValue()),self.nameTextCtrl.GetValue(),self.dateOfBirthTextCtrl.GetValue(),
self.telephoneTextCtrl.GetValue(),self.telephone2TextCtrl.GetValue(),self.treatmentStartTextCtrl.GetValue(),
self.budgetByTextCtrl.GetValue(),self.registrationFormTextCtrl.GetValue()):
patient1 = Patient.get_by(id=self.idTextCtrl.GetValue())
patient1.name = self.nameTextCtrl.GetValue().title()
patient1.dateOfBirth = self.dateOfBirthTextCtrl.GetValue()
patient1.rg = self.rgTextCtrl.GetValue()
patient1.cpf = self.cpfTextCtrl.GetValue()
patient1.telephone = self.telephoneTextCtrl.GetValue()
patient1.telephone2 = self.telephone2TextCtrl.GetValue()
patient1.treatmentStart = self.treatmentStartTextCtrl.GetValue()
patient1.budgetBy = self.budgetByTextCtrl.GetValue()
patient1.registrationForm = self.registrationFormTextCtrl.GetValue()
session.commit()
self.refreshIndex(self.idTextCtrl.GetValue())
self.message = wx.MessageDialog(None, u'Paciente alterado com sucesso!', 'Info', wx.OK)
self.message.ShowModal()
self.nameTextCtrl.SetEditable(False)
self.dateOfBirthTextCtrl.SetEditable(False)
self.rgTextCtrl.SetEditable(False)
self.cpfTextCtrl.SetEditable(False)
self.telephoneTextCtrl.SetEditable(False)
self.telephone2TextCtrl.SetEditable(False)
self.treatmentStartTextCtrl.SetEditable(False)
self.budgetByTextCtrl.SetEditable(False)
self.registrationFormTextCtrl.SetEditable(False)
self.toolBar.EnableTool(ID_TOOLBAR_PATIENT_FIRST, True)
self.toolBar.EnableTool(ID_TOOLBAR_PATIENT_LAST, True)
self.toolBar.EnableTool(ID_TOOLBAR_PATIENT_PREVIOUS, True)
self.toolBar.EnableTool(ID_TOOLBAR_PATIENT_NEXT, True)
self.toolBar.EnableTool(ID_TOOLBAR_PATIENT_NEW, True)
self.toolBar.EnableTool(ID_TOOLBAR_PATIENT_SAVE, False)
self.toolBar.EnableTool(ID_TOOLBAR_PATIENT_REMOVE, True)
self.toolBar.EnableTool(ID_TOOLBAR_PATIENT_EDIT, True)
self.toolBar.EnableTool(ID_TOOLBAR_PATIENT_FIND, True)
self.toolBar.EnableTool(ID_TOOLBAR_PATIENT_CANCEL, False)
else:
if self.valida(self.idTextCtrl.GetValue(),self.nameTextCtrl.GetValue(),self.dateOfBirthTextCtrl.GetValue(),
self.telephoneTextCtrl.GetValue(),self.telephone2TextCtrl.GetValue(),self.treatmentStartTextCtrl.GetValue(),
self.budgetByTextCtrl.GetValue(),self.registrationFormTextCtrl.GetValue()):
patient1 = Patient(name=self.nameTextCtrl.GetValue().title(),dateOfBirth=self.dateOfBirthTextCtrl.GetValue(),
rg=self.rgTextCtrl.GetValue(),cpf=self.cpfTextCtrl.GetValue(),
telephone=self.telephoneTextCtrl.GetValue(),telephone2=self.telephone2TextCtrl.GetValue(),
treatmentStart=self.treatmentStartTextCtrl.GetValue(),budgetBy=self.budgetByTextCtrl.GetValue(),
registrationForm=self.registrationFormTextCtrl.GetValue())
session.commit()
self.refreshIndex(patient1.id)
self.idTextCtrl.SetValue(unicode(patient1.id))
self.message = wx.MessageDialog(None, u'Paciente cadastrado com sucesso!', 'Info', wx.OK)
self.message.ShowModal()
self.nameTextCtrl.SetEditable(False)
self.dateOfBirthTextCtrl.SetEditable(False)
self.rgTextCtrl.SetEditable(False)
self.cpfTextCtrl.SetEditable(False)
self.telephoneTextCtrl.SetEditable(False)
self.telephone2TextCtrl.SetEditable(False)
self.treatmentStartTextCtrl.SetEditable(False)
self.budgetByTextCtrl.SetEditable(False)
self.registrationFormTextCtrl.SetEditable(False)
self.toolBar.EnableTool(ID_TOOLBAR_PATIENT_FIRST, True)
self.toolBar.EnableTool(ID_TOOLBAR_PATIENT_LAST, True)
self.toolBar.EnableTool(ID_TOOLBAR_PATIENT_PREVIOUS, True)
self.toolBar.EnableTool(ID_TOOLBAR_PATIENT_NEXT, True)
self.toolBar.EnableTool(ID_TOOLBAR_PATIENT_NEW, True)
self.toolBar.EnableTool(ID_TOOLBAR_PATIENT_SAVE, False)
self.toolBar.EnableTool(ID_TOOLBAR_PATIENT_REMOVE, True)
self.toolBar.EnableTool(ID_TOOLBAR_PATIENT_EDIT, True)
self.toolBar.EnableTool(ID_TOOLBAR_PATIENT_FIND, True)
self.toolBar.EnableTool(ID_TOOLBAR_PATIENT_CANCEL, False)
