Exemplos de RnaModel.add_missing_5p em Python

Exemplo n.º 1

Arquivo: test_rnamodel.py Projeto: mmagnus/mini-moderna3

    def test_5p_extension(self):
        a = read_alignment("""> target
AAAAAAAAAAGCGGAUUUALCUCAG
> template
----------GCGGAUUUALCUCAG
        """)
        m = RnaModel(None, a, data_type='file', data=MINI_TEMPLATE)
        m.add_missing_5p()
        self.assertEqual(m.get_sequence(), a.target_seq)

Exemplo n.º 2

Arquivo: test_rnamodel.py Projeto: mmagnus/mini-moderna3

    def test_long_5p_extension(self):
        a = read_alignment("""> target
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCGGAUUUALCUCAG
> template
----------------------------------------GCGGAUUUALCUCAG
        """)
        # first number == 1 should not work
        m = RnaModel(None, a, data_type='file', data=MINI_TEMPLATE)
        self.assertRaises(RenumeratorError, m.add_missing_5p)
        # first number == 100 should work
        m = RnaModel(None, a, data_type='file', data=MINI_TEMPLATE)
        renumber_chain(m, 100)
        m.add_missing_5p()
        self.assertEqual(m.get_sequence(), a.target_seq)