# methodID=args[2];
rows = args[1].split(',')
cols = args[2].split(',')
fname = args[3]
ch = Chain(chain_file)
Project = ch.project
methodID = ch.runMethod
d = ch.getMethodsDict()
method = d[methodID]
if len(args) >= 5:
parseXparam(args[4], method)
rows_iterators = []
cols_iterators = []
for k in rows:
rows_iterators.append(method.iterators[k])
for k in cols:
cols_iterators.append(method.iterators[k])
# for k in method.iterators.keys():
# if k in rows:
# rows_iterators.append(method.iterators[k]);
# elif k in cols:
# cols_iterators.append(method.iterators[k]);
project_name = chain.project;
methodID = chain.runMethod;
printOnly = ('--printOnly','') in opts;
# print 'done'
root= os.getenv('MOLDB_PROJECTS') + '/' + project_name + '/Methods';
# methodID = sys.argv[3] if len(sys.argv)>2 else prototype.runMethod;
d=chain.getMethodsDict();
prototype = d[methodID];
if len(args)>1:
parseXparam(args[1],prototype,chain)
prototype.iterators = prototype.getIterators()
# print 'Creating folders...'
xparam = {'moldb_prototype':prototype,
'moldb_root':root,
'moldb_printOnly':printOnly,
'moldb_projectName':project_name
};
iterators = prototype.iterators;
iterate_over_lists(iterators.keys(),iterators.values(), createFolders_callback, xparam)
opts,args=gnu_getopt(sys.argv[1:],'p:',['printMethod','noRefs','addRoot=','--project','noRoot']);
if len(args)<1:
print usage
quit()
ch = Chain(args[0]);
methodID = ch.runMethod;
# methodID = args[1];
methodsDict = ch.getMethodsDict();
# print ch
method = methodsDict[methodID];
if len(args)>1:
parseXparam(args[1],method,ch);
if ('--printMethod','') in opts:
print method
if ('--noRefs','') in opts:
quit();
# root='';
# for o in opts:
# k,v=o
#
output = project_name + '_' + chain_name + '_' + script_words[0] + '.sh'
xparam_arg = False
xparam_arg_val = None
Npar = 1
for o in opts:
k, v = o
if k == '-o': output = v
if k == '-x' or k == '--xparam':
#print 'XPARAM '+v;
xparam_arg = True
xparam_arg_val = v
parseXparam(v, prototype, ch)
prototype.iterators = prototype.getIterators()
if k == '-p' or k == '--proc':
Npar = int(v)
if len(args) >= 3:
xparam_arg = True
xparam_arg_val = args[2]
parseXparam(args[2], prototype, ch)
prototype.iterators = prototype.getIterators()
root = '$MOLDB_PROJECTS/' + project_name + '/Methods'
xparam = {
'moldb_prototype': prototype,
'moldb_root': root
rows=args[1].split(',')
cols=args[2].split(',')
fname=args[3];
ch=Chain(chain_file);
Project = ch.project;
methodID = ch.runMethod;
d=ch.getMethodsDict();
method = d[methodID];
if len(args)>=5:
parseXparam(args[4],method);
rows_iterators=[];
cols_iterators=[];
for k in rows:
rows_iterators.append(method.iterators[k]);
for k in cols:
cols_iterators.append(method.iterators[k]);
# for k in method.iterators.keys():
# if k in rows:
# rows_iterators.append(method.iterators[k]);
# elif k in cols:
output = project_name + '_' + chain_name + '_'+script_words[0] +'.sh'
xparam_arg=False
xparam_arg_val=None
Npar = 1;
for o in opts:
k,v = o
if k=='-o' : output = v;
if k=='-x' or k=='--xparam':
#print 'XPARAM '+v;
xparam_arg=True
xparam_arg_val=v
parseXparam(v,prototype,ch)
prototype.iterators = prototype.getIterators()
if k=='-p' or k=='--proc':
Npar = int(v)
if len(args)>=3:
xparam_arg=True
xparam_arg_val=args[2];
parseXparam(args[2],prototype,ch)
prototype.iterators = prototype.getIterators()
root = '$MOLDB_PROJECTS/'+project_name+'/Methods';
xparam={'moldb_prototype':prototype,'moldb_root':root };
iterators = prototype.iterators;
# methodID = args[2];
project_name = chain.project
methodID = chain.runMethod
printOnly = ('--printOnly', '') in opts
# print 'done'
root = os.getenv('MOLDB_PROJECTS') + '/' + project_name + '/Methods'
# methodID = sys.argv[3] if len(sys.argv)>2 else prototype.runMethod;
d = chain.getMethodsDict()
prototype = d[methodID]
if len(args) > 1:
parseXparam(args[1], prototype, chain)
prototype.iterators = prototype.getIterators()
# print 'Creating folders...'
xparam = {
'moldb_prototype': prototype,
'moldb_root': root,
'moldb_printOnly': printOnly,
'moldb_projectName': project_name
}
iterators = prototype.iterators
iterate_over_lists(iterators.keys(), iterators.values(),
createFolders_callback, xparam)