def main():
utils.parser
nml.loadNeuroML_L123('./two_cells_nml_1.8/two_cells.nml')
#mumbl.loadMumbl("./two_cells_nml_1.8/mumbl.xml")
table1 = utils.recordTarget('/tableA', '/cells/purkinjeGroup_0/Dend_37_41', 'vm')
table2 = utils.recordTarget('/tableB', '/cells/granuleGroup_0/Soma_0', 'vm')
moose.setClock(0, 5e-6)
moose.useClock(0, '/##', 'process')
moose.useClock(0, '/##', 'init')
moose.reinit()
utils.run(0.1)
graphviz.writeGraphviz(__file__+".dot", ignore='/library')
def main():
utils.parser
p = os.path.join(modeldir, "two_cells_nml_1.8/two_cells.nml")
nml.loadNeuroML_L123(p)
# mumbl.loadMumbl("./two_cells_nml_1.8/mumbl.xml")
table1 = utils.recordTarget("/tableA", "/cells/purkinjeGroup_0/Dend_37_41", "vm")
table2 = utils.recordTarget("/tableB", "/cells/granuleGroup_0/Soma_0", "vm")
moose.setClock(0, 5e-6)
moose.useClock(0, "/##", "process")
moose.useClock(0, "/##", "init")
moose.reinit()
utils.run(0.1, verify=True)
graphviz.writeGraphviz("test_mumble.dot", ignore="/library")
utils.plotRecords({"Dend 37": table1, "Soma 0": table2}, outfile="%s.png" % sys.argv[0], subplot=True)
def main( args ):
# d is depth of cable.
d = args['tree_depth']
assert d > 0, "Cable depth can not be nagative"
binCable = BinaryCable( depth = d )
binCable.buildCable( args )
table0 = binCable.recordAt( depth = 0, index = 0 )
table1 = binCable.recordAt( depth = d-1, index = -1)
print("[STIM] Simulating a cable with depth {}".format(d))
binCable.simulate( simTime = args['run_time'], simDt = args['dt'] )
#utils.plotTables( [ table0, table1 ]
# , file = args['output']
# , xscale = args['dt']
# )
graphviz.writeGraphviz(__file__+".dot") #, compartment_shape='point')
def main(args):
# d is depth of cable.
d = args['tree_depth']
assert d > 0, "Cable depth can not be nagative"
binCable = BinaryCable(depth=d)
binCable.buildCable(args)
table0 = binCable.recordAt(depth=0, index=0)
table1 = binCable.recordAt(depth=d - 1, index=-1)
print("[STIM] Simulating a cable with depth {}".format(d))
binCable.simulate(simTime=args['run_time'], simDt=args['dt'])
#utils.plotTables( [ table0, table1 ]
# , file = args['output']
# , xscale = args['dt']
# )
graphviz.writeGraphviz(__file__ + ".dot") #, compartment_shape='point')
def main():
utils.parser
nml.loadNeuroML_L123('./two_cells_nml_1.8/two_cells.nml')
#mumbl.loadMumbl("./two_cells_nml_1.8/mumbl.xml")
table1 = utils.recordTarget('/tableA', '/cells/purkinjeGroup_0/Dend_37_41',
'vm')
table2 = utils.recordTarget('/tableB', '/cells/granuleGroup_0/Soma_0',
'vm')
moose.setClock(0, 5e-6)
moose.useClock(0, '/##', 'process')
moose.useClock(0, '/##', 'init')
moose.reinit()
utils.run(0.1, verify=True)
graphviz.writeGraphviz(__file__ + ".dot", ignore='/library')
utils.plotTables([table1, table2])
def main():
utils.parser
nml.loadNeuroML_L123('./two_cells_nml_1.8/two_cells.nml')
#mumbl.loadMumbl("./two_cells_nml_1.8/mumbl.xml")
table1 = utils.recordTarget('/tableA', '/cells/purkinjeGroup_0/Dend_37_41', 'vm')
table2 = utils.recordTarget('/tableB', '/cells/granuleGroup_0/Soma_0', 'vm')
moose.setClock(0, 5e-6)
moose.useClock(0, '/##', 'process')
moose.useClock(0, '/##', 'init')
moose.reinit()
utils.run(0.1, verify=True)
graphviz.writeGraphviz(__file__+".dot", ignore='/library')
utils.plotRecords({ 'Dend 37' : table1, 'Soma 0' : table2 }
, outfile = '%s.png' % sys.argv[0]
, subplot = True
)
def main():
utils.parser
p = os.path.join(modeldir, 'two_cells_nml_1.8/two_cells.nml')
nml.loadNeuroML_L123(p)
#mumbl.loadMumbl("./two_cells_nml_1.8/mumbl.xml")
table1 = utils.recordTarget('/tableA', '/cells/purkinjeGroup_0/Dend_37_41',
'vm')
table2 = utils.recordTarget('/tableB', '/cells/granuleGroup_0/Soma_0',
'vm')
moose.setClock(0, 5e-6)
moose.useClock(0, '/##', 'process')
moose.useClock(0, '/##', 'init')
moose.reinit()
utils.run(0.1, verify=True)
graphviz.writeGraphviz('test_mumble.dot', ignore='/library')
utils.plotRecords({
'Dend 37': table1,
'Soma 0': table2
},
outfile='%s.png' % sys.argv[0],
subplot=True)
