def initAdmit(self):
mrsman.getUuids(self)
self.deltadate = True
self.src = 'visits'
self.uuid = -1
self.callback = mrsman.addAdmission
try:
mrsman.runTask(self)
except (KeyboardInterrupt, SystemExit):
mrsman.exitFlag = True
print('\n! Received keyboard interrupt, quitting threads.\n')
def initPatients(self):
mrsman.bootstrap(self)
self.deltadate = True
self.src = 'patients'
self.uuid = -1
self.callback = mrsman.addPatient
mrsman.numThreads = 5
try:
mrsman.runTask(self)
except (KeyboardInterrupt, SystemExit):
print('\n! Received keyboard interrupt, quitting threads.\n')
mrsman.exitFlag = True
def initCaregivers(self):
print("bootstrap")
mrsman.bootstrap(self)
self.src = 'caregivers'
self.uuid = -1
self.callback = mrsman.addCaregiver
mrsman.numThreads = 5
if (not self.num):
self.num = 8000
try:
mrsman.runTask(self)
except (KeyboardInterrupt, SystemExit):
mrsman.exitFlag = True
def genMbEvents(self):
mrsman.getUuids(self)
self.deltadate = True
self.uuid = 2
self.src = 'visits'
self.callback = mrsman.addMbEvents
if (self.num):
mrsman.numThreads = 1
self.filter = {'hadm_id': self.num}
else:
mrsman.numThreads = 50
self.num = False
mrsman.runTask(self)
value_type = concepts[headers[i]]['type']
units = concepts[headers[i]]['units']
if (concept_uuid):
observation = {
'concept_uuid': concept_uuid,
'value_type': value_type,
'value': value,
'units': units,
'date': date
}
observations.append(observation)
i += 1
#print(observations)
print("adding patient_id:" + patient_id)
self = type('mrsman', (object, ), {})()
self.debug = True
self.fhir_array = []
mrsman.bootstrap(self)
mrsman.getUuids(self)
self.count = 1
self.num = 1
self.deltadate = True
self.src = 'visits'
self.uuid = 2
self.observations = observations
self.filter = {'visits.subject_id': patient_id}
self.callback = mrsman.addVisitObservations
mrsman.runTask(self)
print(self.fhir_array)
def genBmEvents(self):
mrsman.getUuids(self)
mrsman.numThreads = 50
self.callback = mrsman.addBmEvents
mrsman.runTask(self)