def test_normalize_integration_times(self):
old_shape = self.msi.get_image().shape
integration_times = np.array([1., 2., 3., 4., 5.])
self.msi.add_property({'integration times': integration_times})
mani.normalize_integration_times(self.msi)
np.testing.assert_equal(self.msi.get_image()[1, 3, :],
np.ones_like(integration_times),
"normalized integration times")
np.testing.assert_equal(self.msi.get_properties()['integration times'],
np.ones_like(integration_times),
"integration time property set to ones")
self.assertEqual(self.msi.get_image().shape, old_shape,
"shape did not change from normalizing")
def test_normalize_integration_times(self):
old_shape = self.msi.get_image().shape
integration_times = np.array([1., 2., 3., 4., 5.])
self.msi.add_property({'integration times': integration_times})
mani.normalize_integration_times(self.msi)
np.testing.assert_equal(self.msi.get_image()[1, 3, :],
np.ones_like(integration_times),
"normalized integration times")
np.testing.assert_equal(self.msi.get_properties()['integration times'],
np.ones_like(integration_times),
"integration time property set to ones")
self.assertEqual(self.msi.get_image().shape, old_shape,
"shape did not change from normalizing")
def test_normalize_integration_times_none_given(self):
msi_copy = copy.deepcopy(self.msi)
mani.normalize_integration_times(msi_copy)
np.testing.assert_equal(msi_copy.get_image(), self.msi.get_image(),
"nothing change by normalizing without" + \
"integration times given")
def test_normalize_integration_times_none_given(self):
msi_copy = copy.deepcopy(self.msi)
mani.normalize_integration_times(msi_copy)
np.testing.assert_equal(msi_copy.get_image(), self.msi.get_image(),
"nothing change by normalizing without" + \
"integration times given")
