def test_evaluation_metrics_MLP(self):
mlp = MultilayerPerceptron(16, [16, 8, 4, 2], 2)
test_predictions = np.array([[0.9, 0.1], [0.01, 0.99]])
labels = np.array([[1, 0], [0, 1]])
test_acc = mlp.compute_predictions_accuracy(test_predictions, labels)
confusion_matrix = mlp.compute_confussion_matrix(
test_predictions, labels)
self.assertEqual(test_acc, 100)
np.testing.assert_array_equal(confusion_matrix,
np.array([[1, 0], [0, 1]]))
def perform_one_experiment(X_train, Y_train, X_test, Y_test, config):
"""Performs one experiment with a given data set and generates results."""
# Prepare data
processor = Processor(**config['processor_params'])
X_train = processor.fit_transform(X_train)
X_test = processor.transform(X_test)
imputer = Imputer(**config['imputer_params'])
X_train = imputer.fit_transform(X_train)
X_test = imputer.transform(X_test)
# Creates the algorithm object
algorithm_name = config['experiment']['algorithm']
if algorithm_name == 'random_guess':
algorithm = RandomGuessAlgorithm(**config['algo_params'])
elif algorithm_name == 'rf':
algorithm = RandomForestAlgorithm(**config['algo_params'])
elif algorithm_name == 'multilayer_perceptron':
algorithm = MultilayerPerceptron(n_input=X_train.shape[1], **config['algo_params'])
elif algorithm_name == 'gradient_boosting':
algorithm = GradientBoostingAlgorithm(**config['algo_params'])
else:
raise NotImplementedError('Algorithm {} is not an available option'.format(algorithm_name))
# Perform experiment
results = dict()
results['fit_info'] = algorithm.fit(X_train, Y_train)
pred_proba = algorithm.predict_proba(X_test)
pred = np.argmax(pred_proba, axis=1)
# Calculate and save results
results['log_loss'] = metrics.log_loss(Y_test, pred_proba[:, 1])
results['accuracy'] = metrics.accuracy_score(Y_test, pred)
results['recall'] = metrics.recall_score(Y_test, pred, labels=[0, 1])
results['precision'] = metrics.precision_score(Y_test, pred, labels=[0, 1])
fpr, tpr, thresholds = metrics.roc_curve(Y_test, pred_proba[:, 1])
results['roc_curve'] = {'fpr': fpr, 'tpr': tpr, 'thresholds': thresholds}
results['roc_auc'] = metrics.auc(fpr, tpr)
results['classification_report'] = metrics.classification_report(Y_test, pred, labels=[0, 1])
return results
# ..........................
# TRAIN / TEST SPLIT
# ..........................
X_train, X_test, y_train, y_test = train_test_split(X, y, test_size=0.5)
# Rescale label for Adaboost to {-1, 1}
rescaled_y_train = 2 * y_train - np.ones(np.shape(y_train))
rescaled_y_test = 2 * y_test - np.ones(np.shape(y_test))
# .......
# SETUP
# .......
adaboost = Adaboost(n_clf=8)
naive_bayes = NaiveBayes()
knn = KNN(k=4)
logistic_regression = LogisticRegression()
mlp = MultilayerPerceptron(n_hidden=20)
perceptron = Perceptron()
decision_tree = DecisionTree()
random_forest = RandomForest(n_estimators=150)
support_vector_machine = SupportVectorMachine(C=1, kernel=rbf_kernel)
# ........
# TRAIN
# ........
print "Training:"
print "\tAdaboost"
adaboost.fit(X_train, rescaled_y_train)
print "\tNaive Bayes"
naive_bayes.fit(X_train, y_train)
print "\tLogistic Regression"
logistic_regression.fit(X_train, y_train)
from pixel_parser import Parser
from numpy import exp, array, random, dot
from multilayer_perceptron import MultilayerPerceptron, NeuronLayer
parser = Parser()
#Seed the random number generator
random.seed(1)
hidden_layer_1 = NeuronLayer(5, 35)
# Create layer 2 (a single neuron with 4 inputs)
layer2 = NeuronLayer(1, 5)
# Combine the layers to create a neural network
neural_network = MultilayerPerceptron([hidden_layer_1], layer2)
# print("Stage 1) Random starting synaptic weights: ")a
# The training set. We have 7 examples, each consisting of 3 input values
# and 1 output value.
training_set_inputs = array(parser.get_pixels())
training_set_outputs = array([[0], [0], [1], [1], [1], [0], [1], [0], [0],
[0]])
# Train the neural network using the training set.
# Do it 60,000 times and make small adjustments each time.
neural_network.train(training_set_inputs, training_set_outputs, 100000)
# print("Stage 2) New synaptic weights after training: ")
# neural_network.print_weights()
if __name__ == "__main__":
print("\nLoading data... ", end="")
data, labels = load_mnist("./data/mnist_data.csv")
print("done!")
i = int(len(data) * TEST_SET_PC)
X_train, Y_train = data[i:], labels[i:]
X_test, Y_test = data[:i], labels[:i]
print("\nTraining set samples: %d (%d%%)" % (len(X_train), 100 *
(1 - TEST_SET_PC)))
print("Test set samples: %d (%d%%)" % (len(X_test), 100 * TEST_SET_PC))
mlp = MultilayerPerceptron(input_size=784,
layers_size=HIDDEN_LAYERS + [10],
layers_activation="sigmoid")
print("\nInitial accuracy (training set): %.2f%%" %
(100 * accuracy(mlp.predict(X_train), Y_train)))
print("Initial accuracy (test set): %.2f%%" %
(100 * accuracy(mlp.predict(X_test), Y_test)))
print("\nStarting training session...")
mlp.fit(
data=X_train,
labels=Y_train,
cost_function=MeanSquaredError(),
epochs=TRAINING_EPOCHS,
learning_rate=LEARNING_RATE,
batch_size=32,
gradient_checking=False,
num_training_examples = 5000
x_train = train_data[:num_training_examples, 1:]
y_train = train_data[:num_training_examples, [0]]
x_test = test_data[:, 1:]
y_test = test_data[:, [0]]
layers = [784, 25, 10]
normalize_data = True
max_iterations = 500
alpha = 0.1
multilayer_perceptron = MultilayerPerceptron(x_train, y_train, layers,
normalize_data)
(thetas, costs) = multilayer_perceptron.train(max_iterations, alpha)
plt.plot(range(len(costs)), costs)
plt.xlabel('Grident steps')
plt.xlabel('costs')
plt.show()
y_train_predictions = multilayer_perceptron.predict(x_train)
y_test_predictions = multilayer_perceptron.predict(x_test)
train_p = np.sum(y_train_predictions == y_train) / y_train.shape[0] * 100
test_p = np.sum(y_test_predictions == y_test) / y_test.shape[0] * 100
print('训练集准确率：', train_p)
print('测试集准确率：', test_p)
numbers_to_display = 64
f_activation='sigmoid'
# Generamos el archivo con los resultados obtenidos
f = open ('./results/multilayer_perceptron/' + f_activation + '/multilayer_perceptron_' + repr(num_dense) + 'n_' + repr(max_num_epocs)
+ 'e_f_' + f_activation + '.txt','w')
for i in range(1,max_num_epocs+1):
print("-"*50)
print("Construye red neuronal con ", i, "épocas de entrenamiento")
print("-"*50)
#network = ConvolutionalNetwork('./files', i, 'ConvolutionalNetwork')
network = MultilayerPerceptron('./files', i, 'MultilayerPerceptron')
network.layers_construction(training_sample = True)
network.model.summary()
start_time = time()
network.learn_training_sample()
elapsed_time = time() - start_time
loss,acc = network.evaluate_training_sample()
f.write(repr(i) + '\t' + repr(loss) + '\t' + repr(acc) + '\t' + repr(elapsed_time) + '\n')
# ..........................
# TRAIN / TEST SPLIT
# ..........................
X_train, X_test, y_train, y_test = train_test_split(X, y, test_size=0.5)
# Rescale label for Adaboost to {-1, 1}
rescaled_y_train = 2*y_train - np.ones(np.shape(y_train))
rescaled_y_test = 2*y_test - np.ones(np.shape(y_test))
# .......
# SETUP
# .......
adaboost = Adaboost(n_clf = 8)
naive_bayes = NaiveBayes()
knn = KNN(k=4)
logistic_regression = LogisticRegression()
mlp = MultilayerPerceptron(n_hidden=20)
perceptron = Perceptron()
decision_tree = DecisionTree()
random_forest = RandomForest(n_estimators=150)
support_vector_machine = SupportVectorMachine(C=1, kernel=rbf_kernel)
# ........
# TRAIN
# ........
print "Training:"
print "\tAdaboost"
adaboost.fit(X_train, rescaled_y_train)
print "\tNaive Bayes"
naive_bayes.fit(X_train, y_train)
print "\tLogistic Regression"
logistic_regression.fit(X_train, y_train)
from tensorflow.examples.tutorials.mnist import input_data
from multilayer_perceptron import MultilayerPerceptron
mnist = input_data.read_data_sets("MNIST_data/", one_hot=True)
mlp = MultilayerPerceptron()
mlp.fit(mnist.train.images, mnist.train.labels)
from tensorflow.examples.tutorials.mnist import input_data
from multilayer_perceptron import MultilayerPerceptron
mnist = input_data.read_data_sets("MNIST_data/", one_hot=True)
n_inputs = len(mnist.train.images)
n_classes = len(mnist.train.labels[0])
batch_size = n_inputs // 10
print('Num Inputs: {}'.format(n_inputs))
print('Num classes: {}'.format(n_classes))
print('Batch size: {}'.format(batch_size))
mlp = MultilayerPerceptron(n_inputs, n_classes, batch_size)
mlp.add_layer(50)
mlp.add_layer(20)
mlp.add_layer(10)
mlp.fit(mnist.train.images, mnist.train.labels)
pred = mlp.predict(mnist.test.images)
# ..........................
# TRAIN / TEST SPLIT
# ..........................
X_train, X_test, y_train, y_test = train_test_split(X, y, test_size=0.5)
# Rescaled labels {-1, 1}
rescaled_y_train = 2*y_train - np.ones(np.shape(y_train))
rescaled_y_test = 2*y_test - np.ones(np.shape(y_test))
# .......
# SETUP
# .......
adaboost = Adaboost(n_clf = 8)
naive_bayes = NaiveBayes()
knn = KNN(k=4)
logistic_regression = LogisticRegression()
mlp = MultilayerPerceptron(n_hidden=20, n_iterations=20000, learning_rate=0.1)
perceptron = Perceptron()
decision_tree = ClassificationTree()
random_forest = RandomForest(n_estimators=50)
support_vector_machine = SupportVectorMachine()
lda = LDA()
gbc = GradientBoostingClassifier(n_estimators=50, learning_rate=.9, max_depth=2)
xgboost = XGBoost(n_estimators=50, learning_rate=0.5)
# ........
# TRAIN
# ........
print ("Training:")
print ("\tAdaboost")
adaboost.fit(X_train, rescaled_y_train)
print ("\tDecision Tree")
