def test_generate_sample_FileNotFoundError(binop_file, sorted_binop_expected_locs):
"""If coverage file is not found, return the targets without coverage."""
ggrp = GenomeGroup(binop_file)
ggrp.set_coverage(coverage_file="somethingbad")
sample = run.get_sample(ggrp, ignore_coverage=False)
assert list(gt.loc_idx for gt in sample) == sorted_binop_expected_locs
def test_generate_sample(binop_file, sorted_binop_expected_locs):
"""Sample generation from targets results in a sorted list."""
ggrp = GenomeGroup(binop_file)
sample = run.get_sample(ggrp, ignore_coverage=True)
for gt in sample:
assert gt.source_path == binop_file
assert list(gt.loc_idx for gt in sample) == sorted_binop_expected_locs
