def load_dct(cwd=my_dir, pattern='*.dat'):
# FindAllFiles
print 'cwd:', cwd
print 'pattern:', pattern
dct_find = {'cwd': cwd, 'pattern': pattern}
x = FindAllFiles(dct_find)
# print x.pattern
x.get_files()
# x.print_query(x.dct)
print len(x.dct.keys()), 'of', x.total
set9 = x.dct
# x.dct (last pos.)
# set9 = x.sort_dirname(-1,x.dct)
# x.print_ [query,class]
# x.query_ [dirname,file,filename](searchstring,pos,dct)
# x.remove_[dirname,file,filename](searchstring,pos,dct)
# x.print_query(set9)
# print len(set9.keys()),'of',x.total
# sys.exit()
# return set9
set9 = x.remove_dirname('fail', None, set9)
set9 = x.remove_dirname('builder', None, set9)
set9 = x.remove_filename('_new.dat', set9)
set9 = x.remove_filename('_bac.dat', set9)
set9 = x.remove_dirname('dat', -1, set9)
set9 = x.remove_dirname('altern_', None, set9)
if 1:
set9 = x.remove_filename('_nop_', set9)
set9 = x.remove_filename('_rev_', set9)
print len(set9.keys()), 'of', x.total
set9 = x.sort_dirname(-1, set9)
return set9
def get_round(dct,rnd):
x = FindAllFiles()
set9 = x.query_dirname(rnd,-2,dct)
print 'files entered:',len(dct.keys())
print 'files returned, round %s:' % rnd,len(set9.keys())
set9 = x.sort_dirname(-1,set9)
return set9
def load_dct(cwd=my_dir,pattern='*.dat'):
# FindAllFiles
print('cwd:',cwd)
print('pattern:',pattern)
dct_find = {'cwd':cwd,'pattern':pattern}
x = FindAllFiles(dct_find)
x.get_files()
dct9 = x.sort_dirname(-1,x.dct)
print(len(dct9.keys()),'of',x.total)
return dct9
def get_doz(dct, data_name):
print 'files entered:', len(dct.keys())
x = FindAllFiles()
print data_name
set9 = x.query_dirname(data_name, -2, dct)
set9 = x.sort_dirname(-2, set9)
# lst = set9.keys()
# return sorted(lst)
# return lst
return set9
def get_round(dct, round_name):
print 'files entered:', len(dct.keys())
x = FindAllFiles()
print round_name
set9 = x.query_dirname(round_name, -3, dct)
if len(set9.keys()) == 0:
set9 = x.query_dirname(round_name, -4, dct)
# if ((round_name == 'round_16') and (len(set9.keys()) == 0)):
# set9 = x.query_dirname(round_name,-4,dct)
set9 = x.sort_dirname(-1, set9)
print 'file returned:', len(set9.keys())
return set9
def load_dct(cwd=my_dir, pattern='*.dat'):
# FindAllFiles
print 'cwd:', cwd
print 'pattern:', pattern
dct_find = {'cwd': cwd, 'pattern': pattern}
x = FindAllFiles(dct_find)
# print x.pattern
x.get_files()
# x.print_query(x.dct)
# print len(x.dct.keys()),'of',x.total
set9 = x.remove_dirname('fail', None, x.dct)
set9 = x.remove_dirname('example', None, set9)
set9 = x.remove_dirname('tops_extra', None, set9)
set9 = x.query_dirname("round_%d" % rnd, None, set9)
set9 = x.sort_dirname(-1, set9)
return set9
def load_dct(cwd=my_dir,pattern='*_top.dat'):
# FindAllFiles
print 'cwd:',cwd
print 'pattern:',pattern
dct_find = {'cwd':cwd,'pattern':pattern}
x = FindAllFiles(dct_find)
x.get_files()
# x.print_ [query,class]
# x.query_ [dirname,file,filename](searchstring,pos,dct)
# x.remove_[dirname,file,filename](searchstring,pos,dct)
set9 = x.remove_dirname('fail',None,x.dct)
set9 = x.remove_dirname('example',None,set9)
set9 = x.remove_dirname('tops_extra',None,set9)
set9 = x.query_dirname("round_%d" % proj_round,None,set9)
set9 = x.sort_dirname(-1,set9)
return set9
def load_dct(cwd=my_dir,pattern='*.dat'):
# FindAllFiles
print 'cwd:',cwd
print 'pattern:',pattern
dct_find = {'cwd':cwd,'pattern':pattern}
x = FindAllFiles(dct_find)
x.get_files()
# print len(x.dct.keys()),'of',x.total
set9 = x.remove_dirname('fail',None,x.dct)
set9 = x.remove_dirname('example',None,set9)
set9 = x.remove_dirname('tops_extra',None,set9)
# if((rnd == '10') or (rnd == '11')):
# set9 = x.remove_dirname('_nop_',None,set9)
# set9 = x.remove_dirname('_rev_',None,set9)
set9 = x.query_dirname("round_%d" % rnd,None,set9)
set9 = x.sort_dirname(-1,set9)
# x.print_query(set9)
# sys.exit()
print 'dct_matches:',len(set9.keys())
return set9
def check_hsa_analysis(dct):
for i,k in enumerate(dct.keys()):
os.chdir(dct[k]['dirname'])
# FindAllFiles
dct_hsa = {'cwd':dct[k]['dirname'],'pattern':'*.dat'}
H = FindAllFiles(dct_hsa)
set9 = H.get_files()
# H.query_ [dirname,file,filename](searchstring,pos,dct)
# H.remove_[dirname,file,filename](searchstring,pos,dct)
set9 = H.query_file('hsa',set9)
set9 = H.sort_dirname(-1,set9)
H.print_query(set9)
# set9
print(len(set9.keys()),'of',H.total)
# if ((not os.path.exists('hsa_current')) and (len(set9.keys()) != 0)):
# if (not os.path.exists('hsa_%s' % new_dir)):
if ((dct[traj]['dirname'] == dct[k]['dirname']) and (not os.path.exists('hsa_current'))):
print('making hsa_current')
os.makedirs('hsa_current')
# hcount = 0
for h in set9.keys():
# print h
if os.path.basename(set9[h]['dirname']) == os.path.basename(dct[k]['dirname']):
new_hsa_cur = os.path.join(dct[k]['dirname'],'hsa_current',set9[h]['filename'])
# print 'moving to hsa_current:',new_hsa_cur
# hcount += 1
os.rename(set9[h]['file'],new_hsa_cur)
lst_hsa = glob.glob('hsa_current/hsa*.dat') # 1
if len(lst_hsa) > 0:
print('base:',os.path.basename(dct[k]['dirname']))
print(lst_hsa)
set9 = x.remove_filename('distance_proto_', set9)
set9 = x.remove_dirname('fail', -2, set9)
set9 = x.remove_filename('LOG', set9)
set9 = x.remove_filename('contact', set9)
set9 = x.remove_filename('mt_angles', set9)
set9 = x.remove_filename('indices', set9)
set9 = x.remove_filename('tubulin_inter', set9)
# x.print_query(set9)
set9 = x.query_dirname('3kinesin13', -3, set9)
# set9 = x.sort_dirname(-2,set9)
# x.print_query(set9)
# sys.exit()
# projects: 123, 134, 145
set9 = x.query_dirname(dataname, -2, set9)
set9 = x.sort_dirname(-2, set9)
x.print_query(set9)
point_start = 0
# (3000001, 7) -- confirmed
point_end = 5000000
ma_value = 2500
step = 10
ts = 20.00
nav = 1000
dcdfreq = 100000
d = PlotSop('gsop', point_start, point_end, ma_value, step, ts, nav, dcdfreq)
for i in range(len(set9.keys())):
path = set9[i]['file']
print i, path
# x.print_query(x.dct)
# print len(x.dct.keys()),'of',x.total
# sys.exit()
# x.dct (last pos.)
# x.sort_dirname
# x.print_query,_class
# x.query_ [dirname,file,filename](searchstring,pos,dct)
# x.remove_[dirname,file,filename](searchstring,pos,dct)
set9 = x.remove_dirname('fail', -2, x.dct)
# set9 = x.sort_dirname(-1,set9)
# x.print_query(set9)
# print len(set9.keys()),'of',x.total
# data_name
set9 = x.query_dirname(str(data_name), -2, set9)
set9 = x.sort_dirname(-1, set9)
x.print_query(set9)
print len(set9.keys()), 'of', x.total
# trajectory
set9 = x.query_dirname(str(trajectory), -1, set9)
set9 = x.sort_dirname(-1, set9)
x.print_query(set9)
print len(set9.keys()), 'of', x.total
# sys.exit()
def get_data(values):
data = np.loadtxt(values['file'])
print 'data,load,shape:', data.shape
return data
