def insertionsPerReadBase(self):
return AbstractAnalysis.formatRatio(self.totalReadInsertions, self.matches + self.mismatches)
def identity(self):
return AbstractAnalysis.formatRatio(self.matches, self.matches + self.mismatches + self.totalReadInsertionLength)
def mismatchesPerReadBase(self):
return AbstractAnalysis.formatRatio(self.mismatches, self.matches + self.mismatches)
def readCoverage(self):
return AbstractAnalysis.formatRatio(self.matches + self.mismatches, self.matches + self.mismatches + self.totalReadInsertionLength)
def referenceCoverage(self):
return AbstractAnalysis.formatRatio(self.matches + self.mismatches, self.matches + self.mismatches + self.totalReadDeletionLength)
def insertionsPerReadBase(self):
return AbstractAnalysis.formatRatio(self.totalReadInsertions,
self.matches + self.mismatches)
def mismatchesPerReadBase(self):
return AbstractAnalysis.formatRatio(self.mismatches,
self.matches + self.mismatches)
def identity(self):
return AbstractAnalysis.formatRatio(
self.matches,
self.matches + self.mismatches + self.totalReadInsertionLength)
def referenceCoverage(self):
return AbstractAnalysis.formatRatio(
self.matches + self.mismatches,
self.matches + self.mismatches + self.totalReadDeletionLength)
def readCoverage(self):
return AbstractAnalysis.formatRatio(
self.matches + self.mismatches,
self.matches + self.mismatches + self.totalReadInsertionLength)