def test_magicgui_get_viewer(make_napari_viewer):
"""Test that annotating with napari.Viewer gets the Viewer"""
# Make two DIFFERENT viewers
viewer1 = make_napari_viewer()
viewer2 = make_napari_viewer()
assert viewer2 is not viewer1
# Ensure one is returned by napari.current_viewer()
from napari import current_viewer
assert current_viewer() is viewer2
@magicgui
def func(v: Viewer):
return v
def func_returns(v: Viewer) -> bool:
"""Helper function determining whether func() returns v"""
func_viewer = func()
assert isinstance(func_viewer, PublicOnlyProxy)
return func_viewer.__wrapped__ is v
# We expect func's Viewer to be current_viewer, not viewer
assert func_returns(viewer2)
assert not func_returns(viewer1)
# With viewer as parent, it should be returned instead
viewer1.window.add_dock_widget(func)
assert func_returns(viewer1)
assert not func_returns(viewer2)
# no widget should be shown
assert not func.v.visible
# ensure that viewer2 is still the current viewer
assert current_viewer() is viewer2
def test_current_viewer(make_napari_viewer):
"""Test that the viewer made last is the "current_viewer()" until another is activated"""
# Make two DIFFERENT viewers
viewer1: Viewer = make_napari_viewer()
viewer2: Viewer = make_napari_viewer()
assert viewer2 is not viewer1
# Ensure one is returned by napari.current_viewer()
from napari import current_viewer
assert current_viewer() is viewer2
assert current_viewer() is not viewer1
viewer1.window.activate()
assert current_viewer() is viewer1
assert current_viewer() is not viewer2
def _widget_is_checked(widget_name: str) -> bool:
# Get napari viewer from current process
viewer = napari.current_viewer()
# Get scene management widget
scene_manager_choices_widget = viewer.window._dock_widgets[
AICSIMAGEIO_CHOICES]
for child in scene_manager_choices_widget.widget().children():
if isinstance(child, QCheckBox):
if child.text() == widget_name:
return child.isChecked()
return False
def get_or_create_viewer():
import napari
return napari.current_viewer() or napari.Viewer()
def _get_scenes(path: "PathLike", img: AICSImage, in_memory: bool) -> None:
# Get napari viewer from current process
viewer = napari.current_viewer()
# Add a checkbox widget if not present
if AICSIMAGEIO_CHOICES not in viewer.window._dock_widgets:
# Create a checkbox widget to set "Clear On Scene Select" or not
scene_clear_checkbox = QCheckBox(CLEAR_LAYERS_ON_SELECT)
scene_clear_checkbox.setChecked(False)
# Create a checkbox widget to set "Unpack Channels" or not
channel_unpack_checkbox = QCheckBox(UNPACK_CHANNELS_TO_LAYERS)
channel_unpack_checkbox.setChecked(False)
# Add all scene management state to a single box
scene_manager_group = QGroupBox()
scene_manager_group_layout = QVBoxLayout()
scene_manager_group_layout.addWidget(scene_clear_checkbox)
scene_manager_group_layout.addWidget(channel_unpack_checkbox)
scene_manager_group.setLayout(scene_manager_group_layout)
scene_manager_group.setFixedHeight(100)
viewer.window.add_dock_widget(
scene_manager_group,
area="right",
name=AICSIMAGEIO_CHOICES,
)
# Create the list widget and populate with the ids & scenes in the file
list_widget = QListWidget()
for i, scene in enumerate(img.scenes):
list_widget.addItem(f"{i}{SCENE_LABEL_DELIMITER}{scene}")
# Add this files scenes widget to viewer
viewer.window.add_dock_widget(
list_widget,
area="right",
name=f"{Path(path).name}{SCENE_LABEL_DELIMITER}Scenes",
)
# Function to create image layer from a scene selected in the list widget
def open_scene(item: QListWidgetItem) -> None:
scene_text = item.text()
# Use scene indexes to cover for duplicate names
scene_index = int(scene_text.split(SCENE_LABEL_DELIMITER)[0])
# Update scene on image and get data
img.set_scene(scene_index)
data = _get_full_image_data(img=img, in_memory=in_memory)
# Get metadata and add to image
meta = _get_meta(data, img)
# Optionally clear layers
if _widget_is_checked(CLEAR_LAYERS_ON_SELECT):
viewer.layers.clear()
# Optionally remove channel axis
if not _widget_is_checked(UNPACK_CHANNELS_TO_LAYERS):
meta["name"] = scene_text
meta.pop("channel_axis", None)
viewer.add_image(data, **meta)
list_widget.currentItemChanged.connect(open_scene) # type: ignore
def test_top_level_availability(make_napari_viewer):
"""Current viewer should be available at napari.current_viewer."""
viewer = make_napari_viewer()
assert viewer == napari.current_viewer()
""" Get a reference to the current napari viewer. Whilst this example is contrived, it can be useful to get a reference to the viewer when the viewer is out of scope. """ import napari # create viewer viewer = napari.Viewer() # lose reference to viewer viewer = 'oops no viewer here' # get that reference again viewer = napari.current_viewer()
