def generate_cell(self):
# cell = self.h.cell()
from neuron import h as H
H.load_file("cell_template.hoc")
cell = H.cell()
morphology_path = self.description.manifest.get_path('MORPHOLOGY')
self.generate_morphology(cell, morphology_path)
self.load_cell_parameters(cell)
self.cell = cell
def attach_recordings(self, ntimepts):
hoc_vectors = {
'v': h.Vector(ntimepts),
'ina': h.Vector(ntimepts),
'ik': h.Vector(ntimepts),
'ica': h.Vector(ntimepts),
'i_leak': h.Vector(ntimepts),
'i_cap': h.Vector(ntimepts),
}
hoc_vectors['v'].record(h.cell(0.5)._ref_v)
hoc_vectors['ina'].record(h.cell(0.5)._ref_ina)
hoc_vectors['ica'].record(h.cell(0.5)._ref_ica)
hoc_vectors['ik'].record(h.cell(0.5)._ref_ik)
hoc_vectors['i_leak'].record(h.cell(0.5).pas._ref_i)
hoc_vectors['i_cap'].record(h.cell(0.5)._ref_i_cap)
return hoc_vectors
def attach_clamp(self):
h('objref clamp')
clamp = h.IClamp(h.cell(0.5))
clamp.delay = 0
clamp.dur = h.tstop
h.clamp = clamp